Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0166 ATGGATACAGTGACAGCATTGGTGGCAGAAAGGCCAGCGGTGATCTTCAGCAAGAGTAACTGCTGCATTAGCCACTCGATCAAGACACTCTTCTGGGACTTTGGGGTGAACCCTGCAGTGTACGAGCTCGATGAGATGCCGAGAGGGAGGGAAATCGAACAAGCTCTGGCCGGTCAGCTCAGACGTAATCCGACCGTGCCGTCTGTGTTCATTGGTGGTCAATTCGTCGGTGGAGCCAATGAGGTCATGAGCCTTCACCTTACCCGCTCCTTAATACCCATGCTTAGAAAGGCCGGTGCTTTATGGGTCTGA 312 53.21 MDTVTALVAERPAVIFSKSNCCISHSIKTLFWDFGVNPAVYELDEMPRGREIEQALAGQLRRNPTVPSVFIGGQFVGGANEVMSLHLTRSLIPMLRKAGALWV 103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 780157 780468 - Conep04aG0017200.1 Cone4ag0166 435144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0166 103 Pfam Glutaredoxin 14 76 IPR002109 -
Cone4ag0166 103 CDD GRX_GRXh_1_2_like 12 94 - -
Cone4ag0166 103 SUPERFAMILY Thioredoxin-like 2 102 IPR036249 -
Cone4ag0166 103 NCBIfam glutaredoxin-like family 5 103 IPR011905 -
Cone4ag0166 103 PANTHER GLUTAREDOXIN 1 102 IPR011905 -
Cone4ag0166 103 Gene3D Glutaredoxin 1 102 - -
Cone4ag0166 103 ProSiteProfiles Glutaredoxin domain profile. 1 102 - -
Cone4ag0166 103 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Cone4ag0166 103 PRINTS Glutaredoxin signature 59 72 IPR014025 -
Cone4ag0166 103 PRINTS Glutaredoxin signature 73 86 IPR014025 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0166 K03676 - - mtr:11411742 165.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0918 Cone-Chr20:6614914 Cone4ag0166 Cone-Chr4:780157 4.98E-36 dispersed
Cone20ag0919 Cone-Chr20:6627046 Cone4ag0166 Cone-Chr4:780157 8.82E-34 dispersed
Cone4ag0130 Cone-Chr4:596433 Cone4ag0166 Cone-Chr4:780157 3.16E-61 dispersed
Cone14ag0776 Cone-Chr14:4493947 Cone4ag0166 Cone-Chr4:780157 1.10E-54 wgd
Cone17ag0484 Cone-Chr17:2343583 Cone4ag0166 Cone-Chr4:780157 4.71E-33 wgd
Cone18ag0691 Cone-Chr18:3694684 Cone4ag0166 Cone-Chr4:780157 3.51E-30 wgd
Cone20ag0917 Cone-Chr20:6604287 Cone4ag0166 Cone-Chr4:780157 1.65E-33 wgd
Cone4ag0166 Cone-Chr4:780157 Cone7ag0169 Cone-Chr7:710579 1.50E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g347 . . . . . . . . Cmo08g01184 . Cma06g01477 . . . Sed09g0224 Cpe08g00205 . Bhi01g00967 Tan10g0969 Cmetu11g0167 . . . Lcy11g1438 Cla06g00497 Cam06g0534 Cec06g0534 Cco06g0538 Clacu06g0519 Cmu06g0521 Cre06g1291 Cone14ag0776 . . Cone4ag0166 Lsi05g01514 . Chy11g01481 Cme06g00704 . . Bda11g00537 . . Bpe13g00651 . Bma06g01515 Sed07g0377 . . Cma08g01211 Cma17g00312 . . Cpe12g00263 Cpe17g00007 Bhi12g02090 Tan06g0868 Cmetu01g1682 Lac12g2385 Hepe03g0120 . Lcy13g0195 Cla05g00627 Cam05g0687 Cec05g0696 Cco05g0693 Clacu05g0681 Cmu05g0649 Cre05g0720 Lsi09g01408 Csa03g01428 Chy06g00668 Cme11g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002089 2 2 2 3 2 2 0 2 2 2 1 2 4 2 2 3 2 3 5 2 2 2 2 2 2 2 2 3 2 1 65