Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0174 ATGGGGTGTGTGTTTGGGAAGGAGGTCTCGGCGAAGTCTGTGGAGAAGGGAGGGGAGAGAGAGGGGAGGAGGAGGAAGGACGAGGAGGAGGAGGAGGAGGTGGTCGTTAGGGATTCTACGAAGGGAGAGGTCGGTGAAGCTCAGAATGGTGGGAATCGGAACGAGGCTGACGAGCAGGAGAAGAGCACGAGCACGAGACCGAGAGGTGAACGGAAGCGATCGTCGAAGCCGAATCCGAGGCTGAGTAATCCACCGAATAATGTGCATGGCGAACAAGTGGCGGCTGGATGGCCATCTTGGCTCTCTGCTGTCGCCGGAGAAGCCATTAACGGGTGGACACCTCGGCGAGCTGATACTTTTGAGAAGCTAGACAAAATCGGGCAAGGTACATACAGTAATGTGTACAAAGCCAGAGACTCGTTGACAGGGAAAATTGTTGCACTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTAAGATTCATGGCAAGAGAGATTCTTATTCTACGGCGTTTAGATCATCCCAATGTTGTGAAATTGGAAGGTTTAGTCACGTCTAGGATGTCTTGTAGTTTGTATCTTGTATTTGAATATATGGAGCATGATTTGGCTGGACTTGCTGCAAGCCCTGTAATAAAGTTCACAGAGTCTCAGGTTAAATGTTATATGCACCAACTATTATCAGGGCTTGAACACTGTCATAATCGCCATGTGCTTCATCGAGATATCAAGGGCTCGAATCTACTTATTGACAATGGTGGGGTCCTTCAGATTGCTGATTTCGGACTGGCTTCCGTCTTTGATCCGAATCACAAGCATCCCATGACTAGCAGGGTGGTTACTTTATGGTATCGTCCCCCAGAACTACTTCTTGGTGCTACTGATTATGGTGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTGGCTGAGTTGCTGGCTGGAAAGCCTATCATGCCTGGTCGCACTGAGGTGGAACAGCTCCATAAGATCTTCAAGTTATGTGGCTCTCCTTCTGAGGAATACTGGAAAAAGTCAAAGCTGCCACATGCAACTATATTCAAGCCTCAACAATCATACAAGCGATGCATATCAGAAACGTTTAAAGATTTTCCACCTTCATCACTTCCCCTGATCGAGACACTTCTTGCAATCGATCCAGCTGGACGCCAAACTGCCACTGATGCATTGAGCAGTGAATTCTTCACAACTAAGCCTTATGCTTGTGAGCCCTCTAGCCTTCCAAAGTACCCTCCAAGCAAGGAGATGGATGCTAAGCTACGTGATGAAGAAGCTAGAAGGCTGAGAGCTGCCGGAAGAGCTAATGCAGATGGCATGAAGAAAATACGCTCCCGTGATAGAGCTGCTAGGCCAATTCCAGCACCCGATGCCAATGCTGAGCTTCAAGTCAATCTTGATAGGCGGCGACTAATATCACATGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCACCACACCAAGATGGAACGCTTGGCTATCCTCTGGGCTCTTCACATCACATTGATCCGATATACGATCCCCCAGATGTTCCATTCAGTTCCGCCAATTTCTCCTACTCAAAAGCTCCCATCCAGACTTGGTCTGGCCCTTTGGTCGACCCGGCTGCCCTGGGCCCACCAAGATGGAAAAAACACGGAGCAGGTGAGGGGAAGGGTCACTCAAAACCATCGAAAAGCTCTGCAAGAGTCTGA 1722 48.72 MGCVFGKEVSAKSVEKGGEREGRRRKDEEEEEEVVVRDSTKGEVGEAQNGGNRNEADEQEKSTSTRPRGERKRSSKPNPRLSNPPNNVHGEQVAAGWPSWLSAVAGEAINGWTPRRADTFEKLDKIGQGTYSNVYKARDSLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPVIKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNGGVLQIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCISETFKDFPPSSLPLIETLLAIDPAGRQTATDALSSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRANADGMKKIRSRDRAARPIPAPDANAELQVNLDRRRLISHANAKSKSEKFPPPHQDGTLGYPLGSSHHIDPIYDPPDVPFSSANFSYSKAPIQTWSGPLVDPAALGPPRWKKHGAGEGKGHSKPSKSSARV 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 812123 815815 + Conep04aG0018000.1 Cone4ag0174 435152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0174 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0174 573 SUPERFAMILY Protein kinase-like (PK-like) 113 409 IPR011009 -
Cone4ag0174 573 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524(InterPro)
Cone4ag0174 573 FunFam probable serine/threonine-protein kinase At1g54610 107 202 - -
Cone4ag0174 573 Gene3D Transferase(Phosphotransferase) domain 1 203 443 - -
Cone4ag0174 573 FunFam probable serine/threonine-protein kinase At1g54610 203 444 - -
Cone4ag0174 573 MobiDBLite consensus disorder prediction 440 461 - -
Cone4ag0174 573 SMART serkin_6 120 404 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0174 573 ProSiteProfiles Protein kinase domain profile. 120 404 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0174 573 MobiDBLite consensus disorder prediction 53 77 - -
Cone4ag0174 573 Pfam Protein kinase domain 120 404 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0174 573 MobiDBLite consensus disorder prediction 440 459 - -
Cone4ag0174 573 MobiDBLite consensus disorder prediction 12 40 - -
Cone4ag0174 573 Gene3D Phosphorylase Kinase; domain 1 107 202 - -
Cone4ag0174 573 CDD STKc_CDK9_like 120 404 - -
Cone4ag0174 573 PANTHER CELL DIVISION PROTEIN KINASE 119 404 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone4ag0174 573 MobiDBLite consensus disorder prediction 484 517 - -
Cone4ag0174 573 MobiDBLite consensus disorder prediction 1 92 - -
Cone4ag0174 573 MobiDBLite consensus disorder prediction 534 573 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0248 Cone-Chr13:1682016 Cone4ag0174 Cone-Chr4:812123 1.92E-241 dispersed
Cone19ag0228 Cone-Chr19:1478009 Cone4ag0174 Cone-Chr4:812123 1.51E-230 dispersed
Cone1ag1738 Cone-Chr1:58138096 Cone4ag0174 Cone-Chr4:812123 6.50E-290 dispersed
Cone2ag0826 Cone-Chr2:34261546 Cone4ag0174 Cone-Chr4:812123 1.93E-183 dispersed
Cone4ag0174 Cone-Chr4:812123 Cone5ag0524 Cone-Chr5:2209239 7.78E-289 dispersed
Cone4ag0174 Cone-Chr4:812123 Cone7ag0178 Cone-Chr7:747060 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82723 PF01764 Lipase_3 1.20E-22 CL0028 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0174 K08819 - vvi:100240938 936.021