Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0175 ATGTCTTTGAAGAGTATAATCCAGGACATGAGGTCTCGCTCCAGGCGAGTGGTGCAGGACGGCTGGGCCGCCCCCGAGGTTAGAGACGGTTTGGAGCAGAGCTGCTGGGCTTACATGCCTCAGGAGCTGCTTAGGGAGGTTTTGGTCAGACTTGAGGCCTCCGAGACTGCTTGGCCACCGAGGAAGACCGTCGTCGCATGCGCCGGAGTTTGCCGGAGCTGGAGAGATATTACGAAGGAGATCGTTAAAACTCCTGAGCTTTCTAGCTTGTTGACGTTTCCGATCTCCGTCAAGCAGCCTGGCCCAAGGGATGTTCTTCTTCAGTGCTTCATAAAACGGAATCGGTCCACTCAATCATATTGTCTTTACCTCAATCTGACTAATGCACTAGCTGAGAATGGAAAGTTTCTTCTTGCTGCACGCAAGTGTAAACGCCCCACCTGCACGGAGTATATTATCTCTCTTCATGCTGATGATATCTCAAAGGGGAGCAGCACTTATGTTGGGAAACTTAGATCTAATTTTTTGGGAACCAAGTTCACAGTCATTGATGGGCAGCCACCTCATGCGGGAGCAAAGATGCCAAAAAGTCGCTCTTCTAGGCTAGTAAACTTGAAGCAAGTTTCACCTAGGTTCCCTGCAGGCAACTACCCAGCGGCCCACATCTCTTACGAATTAAATGTGTTGGGTTCGAGGCAAGTCTCGAGGGGGCCAAGGAGAATGCATTGTATCATGGATTCCATTCCTGTCTCTGCAATTGAACCTGGAGGGAAAGCTCCCACACAGACTGAAATTTCACTAGGCAACATAGAATCCTTTCCATTGCTGCCGTTTTTTCAATCAAAATCAAATCGAACATATAATTTATTGTCAGAGCCGTTGGCCAGTAAGAAAGATGGGGCATTAATACTAAGAAACAAGGCTCCAAGGTGGCATGAACAACTCCAGTGTTGGTGCTTGAATTTCCATGGACGAGTGACCGTTGCTTCAGTGAAAAACTTTCAATTAGTGGCTTCTCCCGAAGATGGTCCAGCTGGACCAGAGCACGAGAAGATCATTCTTCAATTCGGAAAAGTTAAGAAAGATCTGTTTACAATGGATTACCGATATCCAATCTCAGCATTTCAGGCTTTTGCGATCTGCCTTAGCAGCTTTGACACCAAAATTGCTTGTGAATGA 1179 47.24 MSLKSIIQDMRSRSRRVVQDGWAAPEVRDGLEQSCWAYMPQELLREVLVRLEASETAWPPRKTVVACAGVCRSWRDITKEIVKTPELSSLLTFPISVKQPGPRDVLLQCFIKRNRSTQSYCLYLNLTNALAENGKFLLAARKCKRPTCTEYIISLHADDISKGSSTYVGKLRSNFLGTKFTVIDGQPPHAGAKMPKSRSSRLVNLKQVSPRFPAGNYPAAHISYELNVLGSRQVSRGPRRMHCIMDSIPVSAIEPGGKAPTQTEISLGNIESFPLLPFFQSKSNRTYNLLSEPLASKKDGALILRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEDGPAGPEHEKIILQFGKVKKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 819037 822282 - Conep04aG0018300.1 Cone4ag0175 435153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0175 392 ProSitePatterns Tub family signature 1. 322 335 IPR018066 -
Cone4ag0175 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Cone4ag0175 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Cone4ag0175 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Cone4ag0175 392 PRINTS Tubby superfamily signature 167 191 IPR000007 -
Cone4ag0175 392 PRINTS Tubby superfamily signature 216 243 IPR000007 -
Cone4ag0175 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Cone4ag0175 392 PRINTS Tubby superfamily signature 151 167 IPR000007 -
Cone4ag0175 392 Pfam Tub family 97 387 IPR000007 -
Cone4ag0175 392 CDD F-box_AtTLP-like 36 80 - -
Cone4ag0175 392 Pfam F-box domain 39 79 IPR001810 GO:0005515(InterPro)
Cone4ag0175 392 SUPERFAMILY Tubby C-terminal domain-like 85 392 IPR025659 -
Cone4ag0175 392 ProSitePatterns Tub family signature 2. 377 392 IPR018066 -
Cone4ag0175 392 Gene3D - 28 87 - -
Cone4ag0175 392 FunFam Tubby-like F-box protein 93 392 - -
Cone4ag0175 392 Gene3D Tubby Protein; Chain A 94 392 IPR025659 -
Cone4ag0175 392 SUPERFAMILY F-box domain 27 79 IPR036047 GO:0005515(InterPro)
Cone4ag0175 392 PANTHER TUBBY-RELATED 23 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0284 Cone-Chr17:1364840 Cone4ag0175 Cone-Chr4:819037 1.94E-10 dispersed
Cone4ag0175 Cone-Chr4:819037 Cone7ag1448 Cone-Chr7:10255177 1.56E-148 dispersed
Cone14ag0786 Cone-Chr14:4593835 Cone4ag0175 Cone-Chr4:819037 8.56E-201 wgd
Cone17ag0479 Cone-Chr17:2307427 Cone4ag0175 Cone-Chr4:819037 8.40E-179 wgd
Cone20ag0910 Cone-Chr20:6566008 Cone4ag0175 Cone-Chr4:819037 3.90E-177 wgd
Cone4ag0175 Cone-Chr4:819037 Cone7ag0180 Cone-Chr7:753931 1.18E-269 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45900 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0175 K19600 - csv:101217713 636.721