Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag0176 | ATGGAAGCGAGCTCTCCTGCGGGGATGATGAGTTTGGCGACGGCATTGAGCTCAGATCACGCCTCGGTGGTTTCTATGAATCTATTCGTAGCGCTGGTTTGCGCTTGCATCGTTATCGGCCACTTGTTGGAAGAGAATCGATGGATGAACGAGTCCATTACTGCACTGTCGATTGGATTGTGCACAGGAGTGATTATATTGTTTACTACAGGAGGAAAAAGCTCAAGGTTATTGGTGTTTAGTGAAGATCTTTTCTTCATTTATCTTCTTCCCCCTATTATTTTCAATGCCGGATTCCAGGTGAAGAAGAAGCAATTTTTCCATAACTTTATGACTATTATGTTGTTTGGTGCATTTGGCACCCTCATATCTTTCGGAATTATATCATTAGGCGCTAAACACTTCTTCCAGAAAATGAATATCGGTTATCTCGAGTTTGGAGATTACCTAGCAATTGGCGCAATATTTTCTGCTACAGATTCTGTTTGCACCCTACAGGTGCTTAATCAAGAAGAGACACCCTTGCTATACAGCCTTGTTTTTGGGGAAGGAGTAGTTAACGATGCAACATCCGTGGTTCTATTCCATGCTATCCAGAAATTTGACTTATCTCACATTGATTCAAGCATTGCTTTGCAATTTGTTAATAACTTATTGTATCTCTTTATTGCAAGTACGGCTCTTGGAGTGGGAGCTGGTTTATTTAGTGCATTTGTGATTAAGAAGCTGGGCAGAAGACATTGTACGGATCGTGAGGTTGCTCTGATGATACTCATGGCATACCTTTCCTATATGCTTGCTGAGCTCTTTCAATTTAGTGCAATTCTCACTGTCTTCTTTTGTGGGATTGTTATGTCTCATTATACATGGCATAATGTGACAGAGAGTTCAAGAGTGACAACTAAGCATGCTTTTGCTACTCTCTCCTTTGTGTCTGAGATATTCATTTTCCTTTATGTTGGAATGGATGCCTTGGACATTGAGAAATGGAGAGTTGTGAGCCATAGTCCTGGGAAATCAATTGGCGTGAGTTCAGTTCTGATCGGACTTCTTCTCGTTGGAAGAGCAGCATTTGTTTTCCCTCTATCATTCTTGTCCAACTTGACCAAAAAATCTCCTCATGACAAACTCACTTTTAAGCAACAAGTCACAATTTGGTGGGCCGGTCTTATGCGTGGGGCCGTATCTATGGCACTTGCATATAATCAGTTTACCCGGTTAGGCCATACACAACTTCGTGGAAATGCAATGTTGATTACAAGTACAATCACAGTAGTTCTTTTCAGCACAGTAGTGTTTGGGCTGATGACAAAACATCTAGTGAGGATCTTACTTCCTCCATCGAAATTCATAGTCGGAATGTTTTCCTCCGAACCATCTTCTCCCAAGTCCTTTACTATGCCACTTCTCATTGACTGCCAAAATTCAGAGGCTGGGGAGCATGCCAATGAAAATGGTCCACACCCCACTGGATTACTATGGATGCTTCTGAGCATCCGGGTTCACTCCATCCACCACTATTGGCGTAGATTCGATAATACTTTCATGCGACCGGTTTTTGGCGGTAGAGGTTTCGTTCCTTTCATTCCCGGATCACCCACAGAAGAAGGTCCTCCAGATTGGCAGTGA | 1629 | 42.54 | MEASSPAGMMSLATALSSDHASVVSMNLFVALVCACIVIGHLLEENRWMNESITALSIGLCTGVIILFTTGGKSSRLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFHNFMTIMLFGAFGTLISFGIISLGAKHFFQKMNIGYLEFGDYLAIGAIFSATDSVCTLQVLNQEETPLLYSLVFGEGVVNDATSVVLFHAIQKFDLSHIDSSIALQFVNNLLYLFIASTALGVGAGLFSAFVIKKLGRRHCTDREVALMILMAYLSYMLAELFQFSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVSEIFIFLYVGMDALDIEKWRVVSHSPGKSIGVSSVLIGLLLVGRAAFVFPLSFLSNLTKKSPHDKLTFKQQVTIWWAGLMRGAVSMALAYNQFTRLGHTQLRGNAMLITSTITVVLFSTVVFGLMTKHLVRILLPPSKFIVGMFSSEPSSPKSFTMPLLIDCQNSEAGEHANENGPHPTGLLWMLLSIRVHSIHHYWRRFDNTFMRPVFGGRGFVPFIPGSPTEEGPPDWQ | 542 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 826177 | 829410 | + | Conep04aG0018400.1 | Cone4ag0176 | 435154 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag0176 | 542 | Gene3D | - | 146 | 196 | - | - | |
| Cone4ag0176 | 542 | PRINTS | Na+/H+ exchanger signature | 98 | 112 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone4ag0176 | 542 | PRINTS | Na+/H+ exchanger signature | 153 | 163 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone4ag0176 | 542 | PRINTS | Na+/H+ exchanger signature | 113 | 121 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone4ag0176 | 542 | PRINTS | Na+/H+ exchanger signature | 84 | 95 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone4ag0176 | 542 | Pfam | Sodium/hydrogen exchanger family | 33 | 442 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Cone4ag0176 | 542 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 17 | 533 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag0092 | Cone-Chr1:464149 | Cone4ag0176 | Cone-Chr4:826177 | 6.82E-50 | dispersed | |
| Cone4ag0176 | Cone-Chr4:826177 | Cone9ag0040 | Cone-Chr9:173759 | 2.39E-201 | dispersed | |
| Cone17ag0478 | Cone-Chr17:2302988 | Cone4ag0176 | Cone-Chr4:826177 | 3.21E-103 | wgd | |
| Cone20ag0909 | Cone-Chr20:6560461 | Cone4ag0176 | Cone-Chr4:826177 | 1.10E-219 | wgd | |
| Cone4ag0176 | Cone-Chr4:826177 | Cone7ag0181 | Cone-Chr7:761678 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag0176 | - | - | - | 0.0 |