Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0178 ATGAGCCTATTGCGACAGGATGGAAAACTACCAGAAGATTCAATTCATGATTTTGCTCATGGCCTCGTTAAAGCATTGCAGTTCTTACATTCAAAGGGAATCCTTTACTGTGATCTGAAGCCATCAAACATATTGTTGGATGAAAACGGGCATACAAAGCTTTGTGATTTTGGATTGGCTAGAAAATTGAGTGAGATATCACAAACATCTTCTTCATCGTTGCCACAAGCAAAACGAGGAACACCCTGTTATATGGCTCCCGAGCTATTTGAGGAGGGGAGCGTTCATTCCTTTGCATCTGATTTCTGGGCCCTTGGCTGTGTCCTATATGAGTGCTATGTGGGGCGTCCCCCCTTTGTTGGAAAAGAATTCACTCAATTAGTAAATTCCATCCTCTCAGATCCAACTCCTCCCCTCCCAGGTAGTCCTAGCTGCCCTTTTGTCAATCTAGTAAATTCTTTGCTGGTAAAAGATCCGGCTGATAGAATACAGTGGCTTGAGCTCTGCAGACATTCTTTTTGGCAAAGTAAAATCTCTATTGTACCTCTACCTCCGCAGCCAGCTTTTGATTCCATGATAGAACAGAATGCCAAACCTTGTCTTTCAGAAAGAAATGGTGATAGATCTTTCCACAGCAAGACCCCTCCTAAAAGTCGTGAAAAGGATGTAAAAGGACATTTGAAGGAGGATGAGAATTCTCTGGTACCAAGAGGATATGAAACACCAGTTAAGGGTACACCAAGTGGCCAAAGAGCTAATCATAAGGTTTCTAGTAGACTAGTTGACAAGAAGAAGGAATCTCCCAGTACTACTAGGGGCGTAAATCTCTTAAGACTTTCAAGAATAGCGAAATCAAACTTACAGAGAGAGAATGAGAAGGAAAACTACAGGCGGCCCATACCTAATAGCTGTGAAAATGATTCAGAAGTTAAAATTGAGAATATTGATATGGAGCTTGATTTCAACGAGAGCACTGAAGATGAGACTCATGATGAACCTGATGGGTCTGGTAACCCACCTGGTACAATAGAAGATAACTTATCAAGTCAAACACCGCATCCAGAGAAACTTGAGAGTGAAAGTAACGCAGACAAACTAGACAATCCATCACAGCTTGTCTCCAATGTAATGAAAACTGATGACAAGGAGTCATCTTCAGAACATATTCACGAGGCTGCTATCCCGCCCAGTTTTAGTCCTCAAATTAAAAACCAGAGGATTAAAGAAGGTTCAGGACCTTCTCTTGAGGCTACTTCCTCAAAATCATCTAATGACCTTTCCCAGGTTCTCTGGCATTCCTCGGATCTTTCAGTCAGACCTGTAATGCCCAGCAGAAAAGCTGATAAAGTACAAGATCGAATACCTTCCCTTCCCTTTGACGGACTTCAAGCATCTGATTTTGTGAAGTTATCTGAAGAGCAGCTGGATACACTAAACAATAGAATTCTTTCAATCTTCAATGGGAACACTAATGTTGGAGAGAAGCAGAATGTAATCAGACACCTCGAGCTGTTGAGCAATAATACTGATGCGGCCAATATCTTGACCAATGGTCCGATAATGCTTTTAGTTGTTAAAATGCTTAAACAGACTAAGGCTTTGGCTTTGCGTGTGCAAGTTGCTTCACTTATTGGCTTGTTGATTCGGCATTCAACAGTTATTGAGGATGACTTGGCAAATTCTGGAATATTAGTTTCACTTACTGATGGACTTAGAGATAGGCAGGAAAAGGTTAGGAGGTTTTGTATGGCTGCTTTGGGTGAGTTACTGTTCTACATATCCACTCAAAATGAGCATACAAGAGACCCAACGCCACTGGAATCTCCCTCAAAAGATGCTAGGTCTACAACTGGCTGGCAAGTTTCAAATTCATTAATTTCATTGGTATCATCAATGCTGCGAAAAGGAGAAGACGATATGACACAACTTTATGCATTGAGGACAATTGAAAACATTTGCAGTCAAGGAGGGCAATGGACATCTCGGTTTACCAGCCAAGATGTAATTACAAATCTTTGCTATATATACAGAGCTGCAGGGAAACAGGAGAGCATGAGGCTCACAGCAGGGTCATGCCTGGTACGCCTTATTCGTTTCAGCCCTCCAAGTATACAATTGGTTCTAGAAAAAATTTCTCTCAAGGACATTGGATCTACGCTTGTGAAGGGTAGCCCAAGGGAACAGCAAATCAGTCTAAACCTTTTGAACATGACTATGCTTGCAAGCCATACGTTAACAAGTATTGGGCGGTATCTTATACCTTTAGTGGAGGATAAAAATCTCATCCCAAACCTTGTCTCCCTTATTGAGCGTGGAAGTGAAGTTTTGAAAGGAAAGACGCTCACTTTGGTGGCTCTTCTTTGTAAGAATGGTAAGAGGTGGCTGCCCCACTTTTTCTGCAATGCTAAGTTACTCTCTGCTGTAGATAGGCTGGAAAAGGAGAAGGATGTGTTTGTGCAGCAATGTTTAGAGGCATTTTTGCATGTTGTGGCATCTACTATACCAAATTTACTGGATTCTATGGTTGGAGATATTCAGCAAATGATGGGTGGAAGGCGTCATGGGCATATCTCCTCCCTTGCTAGCCGAGTTGTTCCAAAAACTAATCTTCATGTGTTTCCCGTCGTTCTTCATCTTCTTGGGAGCTCGTCATTTAAGCACAAGGTCATCAGTCTGAAGGTACTACAGCACTTGGCAAATCTAACAAGGCTTGTAGAGACCCCATTTCAGGGCAGGGATGACTTCCAAATTACACTTCTTCAGGTTCTTGAATCTATCACAGAGGAAGCCTCTGTAATACTTGAAAGTCCAGAAATCTTCATCCTTGAAATTCTCCCGAGTTTGGCTGTTCTGTACCAAGGCAACAAGGATGGTGACGCTAGATTCTTGTGCCTCAAAATTCTTTTCAATGTGATGGTCACTTTTCTAAACGAACCATTCATGGATGGGAAAAGGTCAGAGGATTTAAAATCTATAGCCAATTCACGTTTCCTCCCCCTCTACCCTGCCTTTATAGAAGATGAAGACCCCATTCCTGTCTATGCCCAGAAGCTTCTTGTGATGCTCATTGAGTTTGATTACATTAAAATCCCCGACATTCTACATCTGAAAACAGTCTCCCAATGCTTCGAGTTCTTACTAGGGGATCTCTCCAACGTAAATGTAAACAGTGTGAAACTCTGTCTAGCTCTAGCATCTGCTCCTGAAATGGAAACAAAATTACTTTCCCAACTAAAAGTGGTTCGAAGAATTGGACTTCTTTTGGAATTTGTCTACGCAAAAGATATGGAAGATTTTCTCGAACCGGTTCTTGGTCTATGTAAAGCCTTCCTTCTCCGTTCAGCAAGCAGTAGAAAAGACTGCATCTACACAAAGGAACCGGATCTATTAGGGGACAATGCTTTTGACCCAAACAGTGCAGTCGATCAGAATCAATGCATCGGAGATATGTTGGATTTAGGCAACAATTTTGGGGTCTTGTTAGAGCTGAGCGGGTACAATGAAGCAAGTGTCTCAGACTTAGCTTCTGAATGCATAGTATTGTTGCTCAAGACAGCTCCTAGAGAAGCTACTACTAGTCTTTTGACAAACCTTACAAAGGTTAGTGCTGTGCTCGAGTCTTGGTGTAGTGGGTTACGTCAGTTACCAGTTAGGCGGATTTTGCATGCTCTGGGTTATTCTTGTAGGCAGTATTTATCACATGCGATTATATTGTCGATATCTAGGCCGGAAATTTCGAGGATTGAAGGAGTTATTTTGGAGCTCAATAGTTCTGGTATTGTCAGCTTAGCCGATGATGCCTCTCTTGTGGCCCTGGAGTTGCAACGGCTTCCTCGCGTTTGA 3843 42.18 MSLLRQDGKLPEDSIHDFAHGLVKALQFLHSKGILYCDLKPSNILLDENGHTKLCDFGLARKLSEISQTSSSSLPQAKRGTPCYMAPELFEEGSVHSFASDFWALGCVLYECYVGRPPFVGKEFTQLVNSILSDPTPPLPGSPSCPFVNLVNSLLVKDPADRIQWLELCRHSFWQSKISIVPLPPQPAFDSMIEQNAKPCLSERNGDRSFHSKTPPKSREKDVKGHLKEDENSLVPRGYETPVKGTPSGQRANHKVSSRLVDKKKESPSTTRGVNLLRLSRIAKSNLQRENEKENYRRPIPNSCENDSEVKIENIDMELDFNESTEDETHDEPDGSGNPPGTIEDNLSSQTPHPEKLESESNADKLDNPSQLVSNVMKTDDKESSSEHIHEAAIPPSFSPQIKNQRIKEGSGPSLEATSSKSSNDLSQVLWHSSDLSVRPVMPSRKADKVQDRIPSLPFDGLQASDFVKLSEEQLDTLNNRILSIFNGNTNVGEKQNVIRHLELLSNNTDAANILTNGPIMLLVVKMLKQTKALALRVQVASLIGLLIRHSTVIEDDLANSGILVSLTDGLRDRQEKVRRFCMAALGELLFYISTQNEHTRDPTPLESPSKDARSTTGWQVSNSLISLVSSMLRKGEDDMTQLYALRTIENICSQGGQWTSRFTSQDVITNLCYIYRAAGKQESMRLTAGSCLVRLIRFSPPSIQLVLEKISLKDIGSTLVKGSPREQQISLNLLNMTMLASHTLTSIGRYLIPLVEDKNLIPNLVSLIERGSEVLKGKTLTLVALLCKNGKRWLPHFFCNAKLLSAVDRLEKEKDVFVQQCLEAFLHVVASTIPNLLDSMVGDIQQMMGGRRHGHISSLASRVVPKTNLHVFPVVLHLLGSSSFKHKVISLKVLQHLANLTRLVETPFQGRDDFQITLLQVLESITEEASVILESPEIFILEILPSLAVLYQGNKDGDARFLCLKILFNVMVTFLNEPFMDGKRSEDLKSIANSRFLPLYPAFIEDEDPIPVYAQKLLVMLIEFDYIKIPDILHLKTVSQCFEFLLGDLSNVNVNSVKLCLALASAPEMETKLLSQLKVVRRIGLLLEFVYAKDMEDFLEPVLGLCKAFLLRSASSRKDCIYTKEPDLLGDNAFDPNSAVDQNQCIGDMLDLGNNFGVLLELSGYNEASVSDLASECIVLLLKTAPREATTSLLTNLTKVSAVLESWCSGLRQLPVRRILHALGYSCRQYLSHAIILSISRPEISRIEGVILELNSSGIVSLADDASLVALELQRLPRV 1280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 831592 836480 - Conep04aG0018600.1 Cone4ag0178 435156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0178 1280 MobiDBLite consensus disorder prediction 288 310 - -
Cone4ag0178 1280 SUPERFAMILY ARM repeat 467 831 IPR016024 -
Cone4ag0178 1280 MobiDBLite consensus disorder prediction 364 379 - -
Cone4ag0178 1280 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0178 1280 SUPERFAMILY Protein kinase-like (PK-like) 2 175 IPR011009 -
Cone4ag0178 1280 Gene3D Transferase(Phosphotransferase) domain 1 1 231 - -
Cone4ag0178 1280 MobiDBLite consensus disorder prediction 323 426 - -
Cone4ag0178 1280 MobiDBLite consensus disorder prediction 204 235 - -
Cone4ag0178 1280 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1279 IPR044591 GO:0000911(InterPro)|GO:0000914(InterPro)|GO:0008017(InterPro)
Cone4ag0178 1280 ProSitePatterns Serine/Threonine protein kinases active-site signature. 34 46 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0178 1280 SMART serkin_6 1 174 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0178 1280 Pfam Protein kinase domain 2 173 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0178 1280 MobiDBLite consensus disorder prediction 200 275 - -
Cone4ag0178 1280 Gene3D - 483 831 IPR011989 -
Cone4ag0178 1280 MobiDBLite consensus disorder prediction 341 356 - -
Cone4ag0178 1280 MobiDBLite consensus disorder prediction 398 426 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0178 K28092 - - vvi:100259712 1861.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0178 Cone-Chr4:831592 Cone5ag0611 Cone-Chr5:2621354 4.44E-30 dispersed
Cone4ag0178 Cone-Chr4:831592 Cone7ag0183 Cone-Chr7:767243 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g370 . . . . . Bpe14g01152 . . . . . Cma14g01648 . Car14g01481 . . Cpe03g01392 Bhi01g00926 . . . . . Lcy11g1459 . . . . . . . . . Cone7ag0183 Cone4ag0178 Lsi05g01496 . . Cme06g00683 Blo02g00576 . . . . . . . . . Cmo14g01692 . . . . . . . . . . . . . Cla05g00610 . . . . . . . Csa03g01408 Chy06g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009196 1 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82724 None None None None Cone PK