Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0181 ATGGCTTTGTATGCGTTTACATTTCCTGTTCATATCAACCGAGCAACGACCTTGTCTACCTCCCTGAGGAGTACAGACCTGCCGCCTTTTTTTCAATCTCAACCCAAGCTCAATCAGAGTAGAAAAAGGGTTGCTGGGATTTATGCATCACTGACAGAGAATGGTGAATATCATTCACAGAGACCACCCACTCCTCTCCTCGACACCATCAACTATCCAATCCACATGAAAAATCTATCCAACAAGGAACTTAAACAACTAGCTGATGAATTAAGGTCTGATGTAATCTTCAATGTTTCGAAAACGGGGGGCCACTTAGGTTCGAGCCTTGGAGTCTCTTACCCCCACAAAATCCTTACCGGACGAAGAGATAAGATGCATACTATTCGACAAACAAACGGGTTATCAGGATTCACTAAGCGGTCCGAGAGCGAATATGATTGCTTTGGAACTGGTCACAGCTCCACAACTATCTCAGCAGGCTTAGGAATGGCGGTTGGAAGGGATTTAAAGGGAAAGAAGAACAATGTAGTTTCTGTTATTGGTGATGGAGCCATGACGGCAGGGCAAGCTTATAAAGCCATGAACAATGCCGGATACTTAGATTCCGACATGATTGTTATTCTTAACAACAATAAACAGGTTTCTCTACCTACTGCTAATCTAGATGGGCCCATCCCACCTGTTGGAGCTTTGAGTAGTGCCCTTAGTAGATTGCAATCAAACCGGCCTCTCAGAGAATTAAGAGAAGTTGCCAAGGGTGTTACCAAACAAATAGGTGGTCCCATGCATGAACTGGCTGCTAAAGTTGATGAGTATGCTCGTGGGATGATTAGTGGATCTGGGTTGACCCTTTTCGAAGAGCTCGGGCTGTATTACATCGGTCCAGTCGATGGTCACAACATTGATGATCTCATTGCTATTCTCAGAGAGGTTAAGAGTACTAAAACAACCGGTCCAGTCTTAATCCATGTTGTCACTGGAAAAGGATGTGGACCGAAAAAGCTGCGGACAAGTGTGGCGAAATTTGATCCGGCCACTGGAAAGCAATTGAAAGCCAAGGCTAGTACACAATCTTATACGACATACTTTACTGAGGCTTTAATTGCAGAAGCAGACCAATATATAGTTGCGATACATGCTGCAATGGGAGGGGGAACAGGGCTTAATCTATTTTTACAACGTTTTCCAACAAGATGCTTTGGTGTTGGAATAGCAGAGCAACATGCTGTTACTTTTGCATCTCTGAAACAGACTAATAAAAGTGTTGTTCGGATCCGAAAAATTTTGCAGGTGGTTCATGATGTAGATTTGCAAAAGTTGCCAGTGAGGTTTGCTATGGACCAAGCCGGATTAGTTGGGGCTGATGGCCCAACTCATTGTGGGTCTTTTGACGTGACATTCATGGCCTGCCTTCCAAACATGGTGGTTATGGCTCCTTCAGATGAGGAGGAGCTCTTCCACATGGTTGCTACCTCAGCTGCAATTGATGACCGGCCTAATTGTTTCCTCTATCCTAGAGGAAACGGAATCGGAGTTGAACTACCCCCTAGAAATAAAGGAGTTCCCCTTGACGTGGGGAGAGGGAGGATATTGGTTGAAGGCGAAAGAGTGGCTCTATTAGGCTACGGAACTGCAGTCCAGAGCTGCTTGGCTGCATCCTCATTAGCGGAAAGTCATGGCCTGAGAATAACAGTTGCCGATGCTCGTTTTTGTCTTGGCAGTGGCGACCAATTGTGCTTCCGGACCGGTATATTGACCATGGATCGCCAGTTGACCAGTTGA 1785 45.43 MALYAFTFPVHINRATTLSTSLRSTDLPPFFQSQPKLNQSRKRVAGIYASLTENGEYHSQRPPTPLLDTINYPIHMKNLSNKELKQLADELRSDVIFNVSKTGGHLGSSLGVSYPHKILTGRRDKMHTIRQTNGLSGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVSVIGDGAMTAGQAYKAMNNAGYLDSDMIVILNNNKQVSLPTANLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGLTLFEELGLYYIGPVDGHNIDDLIAILREVKSTKTTGPVLIHVVTGKGCGPKKLRTSVAKFDPATGKQLKAKASTQSYTTYFTEALIAEADQYIVAIHAAMGGGTGLNLFLQRFPTRCFGVGIAEQHAVTFASLKQTNKSVVRIRKILQVVHDVDLQKLPVRFAMDQAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEEELFHMVATSAAIDDRPNCFLYPRGNGIGVELPPRNKGVPLDVGRGRILVEGERVALLGYGTAVQSCLAASSLAESHGLRITVADARFCLGSGDQLCFRTGILTMDRQLTS 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 843979 846688 - Conep04aG0019000.1 Cone4ag0181 435159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0181 594 ProSitePatterns Transketolase signature 1. 92 111 IPR049557 -
Cone4ag0181 594 Pfam Transketolase, pyrimidine binding domain 431 509 IPR005475 -
Cone4ag0181 594 Pfam Transketolase, pyrimidine binding domain 359 414 IPR005475 -
Cone4ag0181 594 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 63 415 IPR029061 -
Cone4ag0181 594 SMART Transket_pyr_3 358 513 IPR005475 -
Cone4ag0181 594 CDD TPP_PYR_DXS_TK_like 364 507 - -
Cone4ag0181 594 Gene3D - 526 574 IPR009014 GO:0003824(InterPro)
Cone4ag0181 594 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 113 572 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Cone4ag0181 594 CDD TPP_DXS 103 332 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Cone4ag0181 594 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 67 112 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Cone4ag0181 594 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 113 327 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Cone4ag0181 594 SUPERFAMILY TK C-terminal domain-like 523 572 IPR009014 GO:0003824(InterPro)
Cone4ag0181 594 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 356 536 IPR029061 -
Cone4ag0181 594 Gene3D - 60 335 - -
Cone4ag0181 594 ProSitePatterns Transketolase signature 2. 454 470 IPR020826 -
Cone4ag0181 594 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 113 572 IPR005477 GO:0008661(InterPro)|GO:0009507(PANTHER)|GO:0015995(PANTHER)|GO:0016114(InterPro)|GO:0016744(PANTHER)
Cone4ag0181 594 Gene3D - 358 415 - -
Cone4ag0181 594 Gene3D - 426 519 - -
Cone4ag0181 594 Pfam Transketolase, C-terminal domain 527 572 IPR033248 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0181 K01662 - - rcu:8262363 904.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0181 Cone-Chr4:843979 Cone9ag1437 Cone-Chr9:10690591 1.60E-244 dispersed
Cone4ag0181 Cone-Chr4:843979 Cone7ag0185 Cone-Chr7:778809 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g381 . . . . . Bpe14g01154 . . Cmo08g01169 Cmo17g00285 . . . . . . . . . . . . . . Cla06g00518 Cam06g0557 Cec06g0557 Cco06g0564 Clacu06g0545 Cmu06g0542 Cre06g1310 . . Cone7ag0185 Cone4ag0181 . . Chy11g01457 . Blo02g00573 . . . . . . . . . . Cma08g01196 Cma17g00297 Car08g01072 Car17g00273 Cpe12g00249 Cpe17g00103 Bhi12g01753 . . . . . . . . . . . . . Lsi09g01384 . . Cme11g01961
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000430 4 7 2 1 2 4 3 4 3 4 4 4 3 4 4 4 4 5 5 4 3 3 4 3 4 4 5 6 10 4 121