Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0183 ATGGAACCTGCTCCGCCTACATCGCGTCAATCGCCGCTACATCCAGACTGCGGCGATTACTTACCTAAGGTTTCAGAAATGAATGTTCACGAATTAGTGACCGATGACCCGTCATTAGCTCTATGGGACTTGGACCTCCTGGACTTCACCGTAGATGATCACTTCTCTCTGTCTCTACAACCTGACGACTCGCCAACTATCGCTCCTCAGCTTGAGATTCCAGTAGAAACATCGAGCTCGGATCGGATTCGGAAACGGGACCCGAGATTGACTTGCTCCAATTACATAGCTGGTCGTGTTCCTTGTGCCTGTCCGGAGCTTGATCGGATGCTTGCTGAGGAAGAAGGCGCCCATGGGAACAAGCGACCCAGGACGGCTAGGTCCACGCATGGAAAGGCTATATGCCAGGTTCCAGGATGTGAGGCTGATATCAGAGAGCTCAAAGGATATCATCGACGGCACAGGGTTTGTCTGCGTTGTGCAAATGCGACTGCAGTTCTAGTCAATGGAGATAGTCAAAGATATTGCCAACAGTGTGGAAAGTTTCACGTTTTGTCAGATTTTGATGAAGGAAAGCGGAGTTGTAGAAGGAAATTAGAGCGGCACAACAACCGGCGTCGAAGGAAGCCTAATGATTCAGTAGTTGCAGTGGAAAACGAATCTGAAGTGTGCATTCAGGATGAAGATTTCATTTCTGACCCTGACCCAGGGAAAGATCATTCATCTCTAATCAGCCAAATAGATGAGAAAGAAGCATTGTTAGAGGCCGAAGGAGCACCTACCACCCTTCCCTCAGTTCCTGAGTCCCATGACATTCATTGTTACAGTGGCAAATCATTTGGGGCTTCAGATGGAAACCAAGTGGATGGAATCAAAGATAATTCTAAACATTCACTTTCTCCATCGTCCTGTGTCAATAGGAGTGGTTATTCAACTATGTGCCCGACAGGTCGAATATCGTTCAAGCTTTATGATTGGAATCCTGCGGAGTTTCCTAGAAGACTTCGGCACCAAATATTCCAGTGGTTGGCCAGTATGCCAGTTGAGTTGGAGGGATATATTCGTCCTGGCTGTATAATCCTGACTACATTTATTGCCATGCCAAAGTCTATGTGGGTGAAGTTACTTGAAGATCCTGTAGCACATGTTCATGACTTTGTTGTTACACCTGGAAGGATGCTGTGTGGGAGGGGCACAATGTTTGTTTATCTGAACAACATGATATTCCGTGTTATTGAAGGTGGAGCTTCTGTGACTGAAGTCAAGGTGGAAGTAAACTCTCCAAGACTTCACTATGTGCATCCTATGTGCTTCGAGGCTGGAAAGCCCATGGAGTTTGTTGCTTGTGGAAGTAATTTGGAACAACCCAAACTTCGGTTTCTTGTATCGTTTTCTGGGAAGTATCTGGCGTACGATTATTGTGTTACCTGTCCAAATGAGGAGGCTATGTGTAGTGTCGACGGCCAGTTATACAAGATATTTATTCCCTTTACTGAACCCAATGTCGTTGGTCCTATGTTTATTGAGGTGGAGAACCAGTCAGGATTGTCAAACTTTATCCCTTTACTTATTGGAAATAAAGAAACTTGTTCTGAGATGAAGAAACTGCAGGAGAGACTTGATATTTCTCTGTTCCCAGAAGCTATTGGTCTTTCACCTAAGTCGTGCGAGTTTCTTACACTAAGACAAAAGGCATATACGGAGCTTATCACCGATGTATCATGGAAATTGGCTGTACTGATACTGATATAA 1752 45.15 MEPAPPTSRQSPLHPDCGDYLPKVSEMNVHELVTDDPSLALWDLDLLDFTVDDHFSLSLQPDDSPTIAPQLEIPVETSSSDRIRKRDPRLTCSNYIAGRVPCACPELDRMLAEEEGAHGNKRPRTARSTHGKAICQVPGCEADIRELKGYHRRHRVCLRCANATAVLVNGDSQRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPNDSVVAVENESEVCIQDEDFISDPDPGKDHSSLISQIDEKEALLEAEGAPTTLPSVPESHDIHCYSGKSFGASDGNQVDGIKDNSKHSLSPSSCVNRSGYSTMCPTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCIILTTFIAMPKSMWVKLLEDPVAHVHDFVVTPGRMLCGRGTMFVYLNNMIFRVIEGGASVTEVKVEVNSPRLHYVHPMCFEAGKPMEFVACGSNLEQPKLRFLVSFSGKYLAYDYCVTCPNEEAMCSVDGQLYKIFIPFTEPNVVGPMFIEVENQSGLSNFIPLLIGNKETCSEMKKLQERLDISLFPEAIGLSPKSCEFLTLRQKAYTELITDVSWKLAVLILI 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 853187 858113 + Conep04aG0019200.1 Cone4ag0183 435161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0183 583 ProSiteProfiles Zinc finger SBP-type profile. 132 209 IPR004333 GO:0003677(InterPro)
Cone4ag0183 583 SUPERFAMILY SBT domain 133 213 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone4ag0183 583 Pfam SBP domain 135 209 IPR004333 GO:0003677(InterPro)
Cone4ag0183 583 Gene3D - 131 196 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone4ag0183 583 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 103 388 IPR044817 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0183 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0183 Cone-Chr4:853187 Cone6ag0516 Cone-Chr6:2580897 9.64E-24 dispersed
Cone4ag0183 Cone-Chr4:853187 Cone7ag0187 Cone-Chr7:791801 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g384 . . . . . Bpe14g01158 . . . . Cma06g01455 Cma14g01651 Car06g01257 Car14g01485 . Cpe08g00222 Cpe03g01395 . . . . . . . . . . . . . . . . Cone7ag0187 Cone4ag0183 Lsi05g01490 . . Cme06g00679 Blo02g00570 Blo07g00193 Bda11g00547 . . Bpe13g00642 . Bma06g01524 . Cmo06g01456 Cmo14g01695 . . . . . . Bhi12g02132 . . . . . Lcy13g0944 Cla05g00605 Cam05g0666 Cec05g0675 Cco05g0670 Clacu05g0660 Cmu05g0629 Cre05g0698 . Csa03g01404 Chy06g00647 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag0385 . 186 1025 SBP-box Gene Family AT2G47070 54.9 4.2e-239 825.1
Cone18ag0772 . 188 1028 SBP-box Gene Family AT2G47070 53.0 7.3e-236 814.3
Cone20ag1033 . 196 983 SBP-box Gene Family AT2G47070 57.1 9.6e-236 813.9
Cone11ag0721 . 1 840 SBP-box Gene Family AT2G47070 52.7 6.2e-235 811.2
Cone18ag0772 . 25 1028 SBP-box Gene Family AT3G60030 50.8 3.2e-257 885.6
Cone17ag0385 . 21 1025 SBP-box Gene Family AT3G60030 52.3 1.9e-254 876.3
Cone20ag1033 . 30 983 SBP-box Gene Family AT3G60030 53.5 6.2e-253 871.3
Cone11ag0721 . 1 840 SBP-box Gene Family AT3G60030 52.4 4.1e-228 788.9
Cone4ag0183 . 26 579 SBP-box Gene Family AT5G18830 52.2 1.4e-163 574.3
Cone14ag0513 . 11 271 SBP-box Gene Family AT1G02065 51.1 8.2e-43 171.4
Cone13ag0543 . 12 165 SBP-box Gene Family AT2G42200 53.5 2.1e-37 154.1
Cone17ag0385 . 186 1025 SBP-box Gene Family AT2G47070 54.9 4.2e-239 825.1
Cone18ag0772 . 188 1028 SBP-box Gene Family AT2G47070 53.0 7.3e-236 814.3
Cone20ag1033 . 196 983 SBP-box Gene Family AT2G47070 57.1 9.6e-236 813.9
Cone11ag0721 . 1 840 SBP-box Gene Family AT2G47070 52.7 6.2e-235 811.2
Cone4ag0183 . 26 579 SBP-box Gene Family AT5G18830 52.2 1.4e-163 574.3
Cone14ag0513 . 11 271 SBP-box Gene Family AT1G02065 51.1 8.2e-43 171.4
Cone13ag0543 . 12 165 SBP-box Gene Family AT2G42200 53.5 2.1e-37 154.1
Cone18ag0772 . 25 1028 SBP-box Gene Family AT3G60030 50.8 3.2e-257 885.6
Cone17ag0385 . 21 1025 SBP-box Gene Family AT3G60030 52.3 1.9e-254 876.3
Cone20ag1033 . 30 983 SBP-box Gene Family AT3G60030 53.5 6.2e-253 871.3
Cone11ag0721 . 1 840 SBP-box Gene Family AT3G60030 52.4 4.1e-228 788.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004916 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45901 PF00198 2-oxoacid_dh 1.60E-74 CL0149 Cone TF