Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0189 ATGTCGTATCAAGGATTTGGGAAGGCTTCTGGGCCTGCTCGACCTCCGAAAGAGCAACCTTCTTTTGGAAATTTTCCAAGTCCGCCTCCTCCTTCACTTTTTTCCGATGCTCCTCCTATACGAACTCTCAGTGGACCAGAAGTTTTCGGGAAGTTTCAATCATCTCCTTTGGATTTTCAAAGCACTGGACCTCCTCCCAGTTTCTATAATCCATCTGCTGGATTCAATAGGCCTCTTGCCCCTTCTAGGCTGGGTGGTGAAGAGCGAGGATTATTCGTGGGAAATCTTAATCCACAGACTGATAAAAGCCTTTCTGCGATCAAATCAGTTGGTTTGTCACCAGATTCTGAAAGCATTACATATGAGGATGCCCGTTTCCAGGTAAAAAGAACCAGGTCACCTCCTCTAATATACAGAGATGAAGAAATATTGGGAAATTCTGGCCAAGCTGTCCTAAAAAAACAAGTTGAATCTGTTTTTTCTGCCCCTACATCGGAAAATCGGCCAAACTTTTCTGGATACGACAATTTGAAGACTCCTCAGGATCAATCCTTTTCAGGTTATTATGATTCTGGAAGAAGTTTTCCGAGGGAAATTGGTAATGTCCAACCCTCCAAAAGAACAAGGTCCCCTCCATTGCCCTCTTCCAATGACAATCCTCGTCAAGATTACAAATCAGCTCAGAATAACTCCAAAAGGCCTTCTACCTCTCCTCCTAGAAGGGGATCTAGGATTAATGATCCTTGCAGTTCTCTTGTTTCTCAGATTGACCAGAGGTCTTTGCCATTTGCAAACAGCACTCCCAAAGCTACTTCAATCAGGCCCACGAGTTCCCCAGTTACCAAAAGAACGAGGTCTCCTTTTTCGTCAGATCAAGTATTTCAGGGAAATTCTTATTCTTCTCAAGATGATACCGAACGAGAAATGCAAGCCAAGGCAAAACGACTGGCTCGCTTCAAGGTGGAATTAAATCATTACAGCTCTGATATTGCTGAAGGAAAGGCTGCCTTTGAGAAAAATCAGCCATCGATGGGAGAAAGTCAGAAACATATATCAAACAATTCTATGGAAGTAGCTGGAGATGATAACAATATTGTATCTGATTATGAAGGGATGGATTCGTCTAGTAATAGCATCATACTTGGGGTATGCCCAGATATGTGTCCAGAGTCAGAGAGGGTGGAACGGGAAAGGAAAGGAGATCTTGATCAGTATGAGAGGTTGGATGGGGATAGAAACCAGACCAACAAATCCCTTGCCGTCAAGAAGTACAATAGGACAGCTGAGCGGGAAGCATCTCTGATAAGACCCATGCCAATCCTGCAGAAGACAATGGATTATCTGCTTAATTTGTTGAATCAACCTTACAATGATAGGTTTCTTAGTATGTATAACTTCTTGTGGGACCGGATGCGGGCTATTCGCATGGACCTTAGAATGCAGCATATTTTTAATGAAGATGCAATTACTATGCTGGAGCAGATGATACGACTTCATATAATTGCGATGCACGAATTGTGTGAATACTCGAAAGGAGAAGGGTTTTCAGAGGGATTTGATGCACACCTTAATATAGAACAGATGAACAAGACATCAGTTGAACTGTTCCAAATGTATGATGATCACAGAAAGAAAGGGATTAATGTCCCTACCGAGAAAGAATTTCGAGGTTATTATGCTCTTCTCAAGCTGGACAAGCATCCTGGATATAAAGTCGAACCTGCTGAGCTCTCGCTTGATCTTGCAAAGATGACTCCAGAAATGAGACAGACTCCAGAAATTCTATTTGCCCGTGATGTAGCAAGAGCTTGCAGAAATGGTAATTTTATTGTGTTCTTTCGTCTTGCAAGGAAGGCAAGTTACCTTCAAGCATGTTTAATGCATGCCCACTTTGCAAAGTTACGGACCCTGGCCCTTGCTTCCCTCCACTCTGGTTTACAGAATAACCAAGGTCTCCCGGTCGCCCATGTTGCTAAGTGGCTTGGGATGGAGGAAGAGGACATATATACTCTTGTAGAGTATCATGGTTTTGCCGTAAAGGAATATGAAGAGCCCTACATGGTCAAAGAAGGTCTGTTTCTCAATAGTGCCAAGGACTATCCTACCAAGTGCTCTAATCTTGTTCACAAGAAAAAGTCAAGAATGATATTTAAGGATGCCTCTTCACCCTCTTATCAAGCCCTCCCCTCACATGCTGAAGCAGCAAAGCTTATCCAGTTTCCAAAAAGGAGTAAAGAACAGCACAAAACAGCCATACCATCATCTAATAAATTTTTTATCAATGCCATTTCAGCTACTGATAGAGAAAACTCTGTTCGTGAAATTCATGAAGAAACACCTAAACTTAAGGCCCATTCAACCCCAAAAGAGTACAGACAACAAGTACAGCAGGTGATTGAAAAAAGGGTAGTTGGTCAGTTGCATGAAAATGCCCATCCGGTGAATCTTCCTCTACAATGGGGTTTTCCATCACCTGGACCTGTACCTACTTTTGGAATTGTCGGTAGAACAAATTATGATGGTCTTTTTAAGAAATCTCCAGATATTGACATACCTTTTGGAATGGAGCGAGTGCCAACACCAGTTTTGTCAAAAGCAGTTATACAAGATAAGACTCCAGATCATCTTTTTAAGAAATCTCCTGTGAGAAACATGTCTTTTGGGATGGAACGAATTTCATCGCCAACTGTATCAAAACCAGCTCTTCAAGATAGATCTAATGGTGGTAATAATAGTTATGTTGTGGAGGATTCAGCACCAAAGAGCTCCACAGATAATATCGTTGGAGATGAAGAACTTCCTTGTAATCACCAGGAAGATAGAGACAATGAGGTTGCAGAAAATCATCAGGACGAGGAAATTGCTGTGGCAAAACTCAAATTGATATTCAGGTTGTGGAGACGCCTTACTTTGAGGAAAAGACAATTGCGTGAGGAAAGGCTGGTAGCAGCAAATGTGGCATTAGACTCATTATCTCTGGGGCCCCCAATAAATTTGAGAAAAGATCAAAGAAGTACTCCCAGCAAATTCGATATTGACCATGCAATGAGGGAAAGACAAAGGAGGCAAGAAATATCATCATCAGTACTTAATGTTTCAGATGTCGTAGCAGATTCACTGAGCCAAAGAAACCCAGAGGCACAATGTCTTTGTTGGAAAATTGTTGTGTGCTCTCAGATAAATGACCCAGTTGGAAATAATCCCAGTCCAAGAAAGCAAATTGGTCATTTGGCTGCGGGCCACTGGCTGCTCTCGAAAATCACGCCTTCCAGGGAAACCAGTGGTCTTCTATTCTCATCAATTGATCTCTCAATATGGAGGAAATGGGTTTCAGATCAATTAGATAGGGATCCAACCTGCTGCTTATCTATAGTTAAGGGGGCAAATTTTGATAATCTTAATGAGACAGTATCCGGTGCAAGTGCGATTTTGTTTGTTGTGTCTGAAAGCATTCCATTGAAGCTTCAAAAAGCCCAACTCCATTCTCTGCTTATGTCAGTTCCATCTGGTTCCTCCTTGCCCCTTCTAATCTTAAGTGGGTTGTACACGGAAGAGATGTCCGATCCTTACCCAGTTCTGGAAAGTGAACTGGGCCTCTATGACATGGACAAATCACGGATTAGTAAATTTAAGATTGTTTCTCTTGTAACAAATCGAGAAGTAGAGCATCTAACCGGGTTCTTCAGTAGCGATAAACTGAGGGTAGGCTTGCAATGGCTTGCGAATGAATCACCCCTGCAGCCTGTCCCTTGTCGTGTAAAAACGCTTGAACTGGTCCTCTCCCATTTGAATTCTTCATTGAATGTGCTCGACTTTAAGCCCGATCATGATGTGGGCCCAAACAACTGTATCTCGGCATTCAATGAAGCCTTGGATCAGTCAGTTGTGGAAATTTCCTCCACCATTGAAGCAAATCCTTGCAATTGGCCCTGTCCTGAGATTGCTTTTCTAGAGGAGTGTAGTCATGAAGAAGAATACATGCGGATGACGCGTGGGTTGCCTATGATAGGGTGGAGCTCAAGAGAAAATGTTGATCGGCTTATTTTTTTGCTAAGAGACCTCAAGCTACCTACTTTTCCGGACGAGTTGTCCTTTCTAACAAGTGGGTCGGAAACTAACAATGAGATTGAGATGCGGAGAGAGGAACTCGAGACTTGCTTGATTGGATACTTAGTAAAATCAAATAAGCTAATGGGATTAACACTGGCAACAAAGGAAGCCTGTGTAATGTTACAACGCTGCTCTCGACTTGAACTCCACAGCAACTCGAGCTACTTCATTATTCCAAAGTGGGTTATGATTTTCCGGCGTATCTTCAATTGGCGGTTAACGGGATTAGCTGCTGGGCCTCACTCGTGGGCTTATATATTGGACAGCTGTCATATTGCTCCTCAAAATTCAGAAGAAGATATAGATATGATCGGGTTAACCTATCATTTGAATCAACCGACTTTAGATGAAATGATTGTAGCAGTGACAGTTGAGAGTGAGAGAATCTGTGAGGATACTGATACGAGTGATCATCTTCAGAATAAAGATGATTTTATGTTTGAAAATAATAAGGTTGTCCCATCTGAGGAAATAGCTTGCTTGAAGGACGGAATGGAGAAAAGTGGGAGAGAGATAGTGGTAGGTGAGAGAGGGAAGAAGGAAGAGTCTCTTGTAAAATTGAGCAAGTTGTTGGAGCAATGTAATATACTGCAGAACGAGATAGATGATAAGCTATCTGTGTATTTTTGA 4740 42.19 MSYQGFGKASGPARPPKEQPSFGNFPSPPPPSLFSDAPPIRTLSGPEVFGKFQSSPLDFQSTGPPPSFYNPSAGFNRPLAPSRLGGEERGLFVGNLNPQTDKSLSAIKSVGLSPDSESITYEDARFQVKRTRSPPLIYRDEEILGNSGQAVLKKQVESVFSAPTSENRPNFSGYDNLKTPQDQSFSGYYDSGRSFPREIGNVQPSKRTRSPPLPSSNDNPRQDYKSAQNNSKRPSTSPPRRGSRINDPCSSLVSQIDQRSLPFANSTPKATSIRPTSSPVTKRTRSPFSSDQVFQGNSYSSQDDTEREMQAKAKRLARFKVELNHYSSDIAEGKAAFEKNQPSMGESQKHISNNSMEVAGDDNNIVSDYEGMDSSSNSIILGVCPDMCPESERVERERKGDLDQYERLDGDRNQTNKSLAVKKYNRTAEREASLIRPMPILQKTMDYLLNLLNQPYNDRFLSMYNFLWDRMRAIRMDLRMQHIFNEDAITMLEQMIRLHIIAMHELCEYSKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKKGINVPTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEMRQTPEILFARDVARACRNGNFIVFFRLARKASYLQACLMHAHFAKLRTLALASLHSGLQNNQGLPVAHVAKWLGMEEEDIYTLVEYHGFAVKEYEEPYMVKEGLFLNSAKDYPTKCSNLVHKKKSRMIFKDASSPSYQALPSHAEAAKLIQFPKRSKEQHKTAIPSSNKFFINAISATDRENSVREIHEETPKLKAHSTPKEYRQQVQQVIEKRVVGQLHENAHPVNLPLQWGFPSPGPVPTFGIVGRTNYDGLFKKSPDIDIPFGMERVPTPVLSKAVIQDKTPDHLFKKSPVRNMSFGMERISSPTVSKPALQDRSNGGNNSYVVEDSAPKSSTDNIVGDEELPCNHQEDRDNEVAENHQDEEIAVAKLKLIFRLWRRLTLRKRQLREERLVAANVALDSLSLGPPINLRKDQRSTPSKFDIDHAMRERQRRQEISSSVLNVSDVVADSLSQRNPEAQCLCWKIVVCSQINDPVGNNPSPRKQIGHLAAGHWLLSKITPSRETSGLLFSSIDLSIWRKWVSDQLDRDPTCCLSIVKGANFDNLNETVSGASAILFVVSESIPLKLQKAQLHSLLMSVPSGSSLPLLILSGLYTEEMSDPYPVLESELGLYDMDKSRISKFKIVSLVTNREVEHLTGFFSSDKLRVGLQWLANESPLQPVPCRVKTLELVLSHLNSSLNVLDFKPDHDVGPNNCISAFNEALDQSVVEISSTIEANPCNWPCPEIAFLEECSHEEEYMRMTRGLPMIGWSSRENVDRLIFLLRDLKLPTFPDELSFLTSGSETNNEIEMRREELETCLIGYLVKSNKLMGLTLATKEACVMLQRCSRLELHSNSSYFIIPKWVMIFRRIFNWRLTGLAAGPHSWAYILDSCHIAPQNSEEDIDMIGLTYHLNQPTLDEMIVAVTVESERICEDTDTSDHLQNKDDFMFENNKVVPSEEIACLKDGMEKSGREIVVGERGKKEESLVKLSKLLEQCNILQNEIDDKLSVYF 1579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 885225 892101 + Conep04aG0019800.1 Cone4ag0189 435167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0189 1579 Coils Coil 1550 1570 - -
Cone4ag0189 1579 MobiDBLite consensus disorder prediction 201 304 - -
Cone4ag0189 1579 MobiDBLite consensus disorder prediction 932 948 - -
Cone4ag0189 1579 MobiDBLite consensus disorder prediction 891 948 - -
Cone4ag0189 1579 MobiDBLite consensus disorder prediction 1 98 - -
Cone4ag0189 1579 ProSiteProfiles PCI domain profile. 524 712 IPR000717 -
Cone4ag0189 1579 Gene3D - 429 727 - -
Cone4ag0189 1579 MobiDBLite consensus disorder prediction 19 36 - -
Cone4ag0189 1579 MobiDBLite consensus disorder prediction 160 190 - -
Cone4ag0189 1579 PANTHER 80 KDA MCM3-ASSOCIATED PROTEIN 223 1297 IPR045107 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006406(PANTHER)|GO:0070390(PANTHER)
Cone4ag0189 1579 MobiDBLite consensus disorder prediction 891 925 - -
Cone4ag0189 1579 MobiDBLite consensus disorder prediction 160 305 - -
Cone4ag0189 1579 MobiDBLite consensus disorder prediction 54 69 - -
Cone4ag0189 1579 Pfam SAC3/GANP family 387 680 IPR005062 -
Cone4ag0189 1579 FunFam Putative peptidase C48 domain family protein 429 731 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0189 K23719 - - vvi:100266559 1359.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0458 Cone-Chr5:1947370 Cone4ag0189 Cone-Chr4:885225 6.88E-48 transposed
Cone4ag0189 Cone-Chr4:885225 Cone7ag0196 Cone-Chr7:832175 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g400 . . . . . . . . . . . Cma14g01664 . Car14g01497 Sed02g1285 . Cpe03g01404 Bhi01g00884 Tan10g0912 Cmetu10g1725 . Hepe05g1504 . Lcy11g1479 . . . . . . . . . Cone7ag0196 Cone4ag0189 Lsi05g01473 . . Cme06g00665 Blo02g00561 . . . . . . . . . Cmo14g01708 . . . . . . . . . . . . . Cla05g00594 Cam05g0654 Cec05g0662 Cco05g0658 Clacu05g0647 Cmu05g0616 Cre05g0684 . Csa03g01390 Chy06g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009906 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 33