Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0190 ATGGGTTGTGTCATTAGTAGATGTTGCAACCGCCGCCCCACACAGGCCCCACCTTTGCCGGACAGCACTAGCTCCAGCTTTGATCTCGAACCCGTACTCGAACCTGAATCCATCCAAGAAGACTGTCCAAAACCTCCTTTCCAAGACAAACAAAACATTCTAACAGAAATGCCGTTAGAAATTCTCCATGTCCCTTCCCACAACTACTTTCTAGAATACTCCACCCTCTCTCACATCGGCTACTACCCGGACTGGCCCGACCGGGAAAACCAAGACAGTTACACCGTCATTAAACAAATCCAATCCAACCCAAACACCCATTTCTTCGGCATATTTGATGGGCACGGAGAATTCGGAACACAATGTTCAAACTTCGTTAAGCGTAGACTTGTAGAATTACTTTCCAAGGACCTCACATTGTTAGAAGACCCCGTAAAAGCTTATCATTCTGCATTTTTAACAACAAATGAGGATTTACATAACAGTGAAGTTGATGATTCGGAAAGCGGTACAACGGCAATTACTGTGCTTGTAACTGAGGACAAGCTTTATATCGCGAATGTAGGTGATTCAAGAGCTGTGATTGCTTTCAAAGAGGGGGATAGAATTCTGGTTCAGGATCTATCGTTCGATCAAACACCGTATAGGGAAGATGAGTGTGAGAGAGTGAAGCGTAGTGGGGCCAGCATTTTGAGTTGCGAACAAATGGAAGGCTTTAAGGACCCGAATATTCAGAATTGGAGTTATGAGGAGAGCCATGGGATTGATCCACCAAGGTTGTGGATTCCAAATAAGGATTATCCGGGTACGGCTTTTACAAGAAGCCTGGGAGATCTAACGGCTGAGCATATTGGGGTGGTTGCTGTTCCGGAAGTTTCCGTGGTCCAGCTCATGCCTGATCATCTCTTCTTTGTTCTTGCAAGTGATGGAGTGTTCGACTTTCTTCCGAGCCAAACTGTCGTCGATATGGCGGCCAGTTATGGGGATCCGAGGGAAGCATGCTCAGCCATTGCCAGAGAGTCGTACAAGTTGTGGTTAGAAAGTGAAAACCGGACGGACGATATCACAATTATTATAGTTCACATTAGAGGCTTGAGGTCAAATTCCGATCGTCGTTCTCTACGAAGCTACTTATCGGATCAAGAGGCTTCTCGGAATGTGGCATCAATGAACCAGAGCACAAATGTTGAAGTTCCATCTCCAATAGATCATAGAACAATGGAAGTAGTATACTTCACAATCAAGTAG 1248 45.27 MGCVISRCCNRRPTQAPPLPDSTSSSFDLEPVLEPESIQEDCPKPPFQDKQNILTEMPLEILHVPSHNYFLEYSTLSHIGYYPDWPDRENQDSYTVIKQIQSNPNTHFFGIFDGHGEFGTQCSNFVKRRLVELLSKDLTLLEDPVKAYHSAFLTTNEDLHNSEVDDSESGTTAITVLVTEDKLYIANVGDSRAVIAFKEGDRILVQDLSFDQTPYREDECERVKRSGASILSCEQMEGFKDPNIQNWSYEESHGIDPPRLWIPNKDYPGTAFTRSLGDLTAEHIGVVAVPEVSVVQLMPDHLFFVLASDGVFDFLPSQTVVDMAASYGDPREACSAIARESYKLWLESENRTDDITIIIVHIRGLRSNSDRRSLRSYLSDQEASRNVASMNQSTNVEVPSPIDHRTMEVVYFTIK 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 891397 893858 - Conep04aG0019900.1 Cone4ag0190 435168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0190 415 CDD PP2Cc 78 362 IPR001932 -
Cone4ag0190 415 ProSitePatterns PPM-type phosphatase domain signature. 108 116 IPR000222 GO:0043169(InterPro)
Cone4ag0190 415 SUPERFAMILY PP2C-like 58 364 IPR036457 -
Cone4ag0190 415 PANTHER PROTEIN PHOSPHATASE 73 361 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone4ag0190 415 Pfam Protein phosphatase 2C 95 341 IPR001932 -
Cone4ag0190 415 ProSiteProfiles PPM-type phosphatase domain profile. 76 362 IPR001932 -
Cone4ag0190 415 SMART PP2C_4 72 360 IPR001932 -
Cone4ag0190 415 Gene3D - 66 363 IPR036457 -
Cone4ag0190 415 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 67 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0190 Cone-Chr4:891397 Cone4ag0752 Cone-Chr4:4192648 2.25E-120 dispersed
Cone14ag0804 Cone-Chr14:4760126 Cone4ag0190 Cone-Chr4:891397 9.42E-161 wgd
Cone15ag0805 Cone-Chr15:4938604 Cone4ag0190 Cone-Chr4:891397 1.46E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0190 - - - 0.0