Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0196 ATGGCGCAGATTTTGGCACCTTCGATACAACTGCAGATGGGAACTGCAAAGACATCTGCAATTTCAAGCCCCGTTACATCTAAGATGTGGAGCTCTATACTATTGAAACAGAAAAAGAAAGGAGCACTTAAAAGCTCTTCTCGATTCAGAGTATATGCGTCAAGTCGGAGAACGAAGCTATCAACAGGCTACACGACCTACTCAATTTGGACATTACTCCGTTTACTGATAAGATTATTGCAGAGTACATCTGTGAAACAATGCAACAGGGTTGGAGGGACCGGAATTGATCTTCGTAGCAAGTCACGGACAATACTAAAGCCAGTGGAACATCCATCTGAGCTTCCCAAGTGGAATTATGATGGGTCAAGTACCGGACAAGCACCAGGAGAAGACAGTGAAGTCATTCTATACCCTCAAGCAATATTTAAGGACCCTTTTCGTGGCGGTAATAATATTTTGGTAATCTGTGATACATACACGCCAGCAGGCGAGCCAATCCCTACTAATAAGCGCCACAAGGCTGCTGAAATTTTCAGCAACAAAAAGGTTTCAGATGAGATCCCTTGGTATGGTATTGAACAAGAGTACACCTTACTTCAGCAAAATGTGAAATGGCCATTAGGGTGGCCTGGTCCTTACTACTGTACCGCTGGGGCAGACAAGTCATTTGGTCGTGACATATCCGATGCTCATTACAAGGCTTGCTTAAATGCTGGAATCAACATAAGCGGAACCAACGGGGAGGTTATGCCCGGGCAGTGGGAGTATCAAGTGGGACCTAGTGTTGGAATTGACGCTGGAGATCATATCTGGATTTCAAGATACATTCTTGAGAGAATCACTGAACAAGCTGGCGTGGTTTTATCTCTTGACCCAAAACCGATAGAGGGTGATTGGAATGGTGCTGGATGCCACACCAATTACAGTACAAAGAGTATGAGAGAGGAGGGAGGCTTTGAATTCCTACCCAACCTGTCAAAAATGAAATCCCAAAATACATTTATGACAATGTCTGAAAATTTTCAATTACATGGAGTGGCTAATCGTGGTTGCTCAATCCGTGTCGGATGGGATACAGAGAAGCAAGGAAAAGGTTACTTGGAAGACAGGCGTCCGGCTTCAAACAGGGACCCGTACGTGGTGACAGCACTACTGGCCGAGACAACAATACTGTGGGAGCCGACACTAGAAGCTGAAGCTCTTGCTGCTCAGAAACTCGCACCCAATGTTTAA 1236 45.06 MAQILAPSIQLQMGTAKTSAISSPVTSKMWSSILLKQKKKGALKSSSRFRVYASSRRTKLSTGYTTYSIWTLLRLLIRLLQSTSVKQCNRVGGTGIDLRSKSRTILKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHKAAEIFSNKKVSDEIPWYGIEQEYTLLQQNVKWPLGWPGPYYCTAGADKSFGRDISDAHYKACLNAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWISRYILERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEFLPNLSKMKSQNTFMTMSENFQLHGVANRGCSIRVGWDTEKQGKGYLEDRRPASNRDPYVVTALLAETTILWEPTLEAEALAAQKLAPNV 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 915468 917904 - Conep04aG0020500.1 Cone4ag0196 435174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0196 411 Pfam Glutamine synthetase, beta-Grasp domain 119 162 IPR008147 GO:0004356(InterPro)|GO:0006542(InterPro)
Cone4ag0196 411 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 168 411 IPR008146 GO:0004356(InterPro)
Cone4ag0196 411 PANTHER GLUTAMINE SYNTHETASE 90 393 IPR050292 GO:0004356(PANTHER)|GO:0005737(PANTHER)|GO:0006542(PANTHER)
Cone4ag0196 411 Pfam Glutamine synthetase, catalytic domain 225 311 IPR008146 GO:0004356(InterPro)
Cone4ag0196 411 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 294 310 IPR027303 -
Cone4ag0196 411 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 83 164 IPR008147 GO:0004356(InterPro)|GO:0006542(InterPro)
Cone4ag0196 411 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 169 395 - -
Cone4ag0196 411 ProSitePatterns Glutamine synthetase signature 1. 120 137 IPR027302 -
Cone4ag0196 411 FunFam Glutamine synthetase 169 338 - -
Cone4ag0196 411 SUPERFAMILY Glutamine synthetase/guanido kinase 169 392 IPR014746 GO:0003824(InterPro)
Cone4ag0196 411 SMART Gln_synt_C_2 168 390 IPR008146 GO:0004356(InterPro)
Cone4ag0196 411 Gene3D - 82 168 IPR036651 GO:0004356(InterPro)|GO:0006542(InterPro)
Cone4ag0196 411 SUPERFAMILY Glutamine synthetase, N-terminal domain 90 167 IPR036651 GO:0004356(InterPro)|GO:0006542(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0196 K01915 - - csv:101212441 615.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0196 Cone-Chr4:915468 Cone7ag0205 Cone-Chr7:867336 1.74E-240 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g412 . . Bda03g01264 . . . Bma04g01174 . . . . Cma14g01668 Car06g01245 Car14g01502 Sed02g1281 Cpe08g00232 Cpe03g01408 Bhi01g00873 Tan10g0907 Cmetu06g1518 . . . . . . . . . . . . . Cone7ag0205 Cone4ag0196 Lsi05g01467 . . Cme06g00659 . . . Bda13g00143 . . . . . Cmo06g01445 Cmo14g01714 . . . . . . . . . . . . . . . . . . . . . Csa03g01384 Chy06g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000333 5 5 3 4 4 4 2 4 4 4 4 4 7 3 4 8 4 8 7 4 4 4 2 4 4 3 4 9 5 5 136