Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0199 ATGTCAGGCCCTGAGTGCTGTTCAAACCCTCCAACCCTCGACCCGATCTCTGGTTCAGGCCATGTTGAAAAACTCGGTGGCCTGAATAGTTATGTAGCTGCCTCTCCTCTCTCAAAACTTGGCCTTATCCTTGTTACTGACGCTTATGGTTATGAAGCCCCGCAAATAAGGAAGCTTGCGGACAAAGTTGCTGCTGCTGGGTATTTTGTGGCAGTTCCTGATTTCTTTCATGGGGATCCATACAGTCACAGCAAGGCAATACCGGAATGGCTGAAGGAACATGGAACGGATAAGGGTTTTGAAAATGCCAAGCTGGTGATTGAGGCTCTGAAAGCAAAAGGCATTTCCACAATTGGCGCTGCCGGCTTTTGCTGGGGTGCCAAGGTTGTGGTTGAACTAGCAAAGGAGGAATTGATTCAAGCTGCTGTGCTTCTACATCCTTCACTTGTCAACGTAGATGATATCAAAGGGGTTAAGGCTCATATTTCAATACTAGGCGCTGAGATCGACCGTGTTTCTCCACCAGAGCTCTTGAAACAGTTTGAAGAGGTCTTGGCTTCTAAACCCGAGATTGATTGGTATGTAAAGGTGTTTCCTAAAGTCATTCATGGTTGGACTATTAGATACGACGACGATGATGAAGCAGCCGTCAAGATTGCCGAGGAGGCTCATCAGAACTTATTGGACTGGTTTTCCAAATACATTAAATTCCTCTGCACTTCTCTGTCTCGCTCCCCTCTCCTTCACCTCAAACCTCCAACCCAAAAACCCGCTTCGCTCCCCAACCCGAAATCCGTTCAACTACTGCCGACAACCTCACAATCTTCTTTCACCTCATTATCATCTTCCCAAATGGGCGACACTAGAAGATCCCGATCAACTACCATCCCCCAAATCGACAAGGCCGACAAGTCCGAGCTGCTCCGTGCTCTAGAATCCTCCATAGGCTCCGCTTTCAGTTCTGACCCGATTCTCCCCAACCCGAACCCGTTAATCATCGTAATCTGTGGCCCCAGCGGGGTCGGCAAGGATGCTGTGATCAAGCGGTTGACGGAGGTCCGAGAAGGGCTTCATTTCGTGGTAACAGCAACGAGCCGTGCAATGAGACCAGGTGAGGTCGACGGCAGAGATTACTATTTCGTTTCTAAGGAAGATTTTGTTTCAATGGTTGAACGTAACGAACTGTTGGAGTACGCATTGGTTTATGGGGATTATAAGGGGATTCCGAAGAAGCAAATTAGGGATTATATGGCCAAAGGGTATGACATCTTGTTGAGAGTTGATATTCAGGGGGCGGAGACGTTGAGGAGGATGCTCGGAAATTCGGTGGTTTTTGTGTTTCTAATGGCGGAGAGTGAGCTGGCGTTGGTGGAGAGGTTGATAAGTCGGAAAACGGAGACTAAAGAGGCTTTGCTGGTGAGAATTGCTACAGCCAGGGAGGAGGTTAAGCATGTTAAGAATTATGATTATGTGGTTGTGAATGAAGAGGGGAAGTTGGAGAACGCGGTCAAGCTTTTGGATTCCATTATTGATGCAGAGAAAGCTAAGGTCCGGCAAAGAAAAGCTGTTATCTAA 1575 47.68 MSGPECCSNPPTLDPISGSGHVEKLGGLNSYVAASPLSKLGLILVTDAYGYEAPQIRKLADKVAAAGYFVAVPDFFHGDPYSHSKAIPEWLKEHGTDKGFENAKLVIEALKAKGISTIGAAGFCWGAKVVVELAKEELIQAAVLLHPSLVNVDDIKGVKAHISILGAEIDRVSPPELLKQFEEVLASKPEIDWYVKVFPKVIHGWTIRYDDDDEAAVKIAEEAHQNLLDWFSKYIKFLCTSLSRSPLLHLKPPTQKPASLPNPKSVQLLPTTSQSSFTSLSSSQMGDTRRSRSTTIPQIDKADKSELLRALESSIGSAFSSDPILPNPNPLIIVICGPSGVGKDAVIKRLTEVREGLHFVVTATSRAMRPGEVDGRDYYFVSKEDFVSMVERNELLEYALVYGDYKGIPKKQIRDYMAKGYDILLRVDIQGAETLRRMLGNSVVFVFLMAESELALVERLISRKTETKEALLVRIATAREEVKHVKNYDYVVVNEEGKLENAVKLLDSIIDAEKAKVRQRKAVI 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 925969 928693 - Conep04aG0020800.1 Cone4ag0199 435177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0199 524 Gene3D Guanylate Kinase phosphate binding domain 361 422 - -
Cone4ag0199 524 SUPERFAMILY alpha/beta-Hydrolases 41 235 IPR029058 -
Cone4ag0199 524 MobiDBLite consensus disorder prediction 252 298 - -
Cone4ag0199 524 ProSitePatterns Guanylate kinase-like signature. 364 381 IPR020590 -
Cone4ag0199 524 PANTHER DIENELACTONE HYDROLASE 1 235 - -
Cone4ag0199 524 MobiDBLite consensus disorder prediction 260 293 - -
Cone4ag0199 524 Pfam Dienelactone hydrolase family 31 234 IPR002925 GO:0016787(InterPro)
Cone4ag0199 524 Pfam Guanylate kinase 333 512 IPR008145 -
Cone4ag0199 524 FunFam Guanylate kinase 1 361 420 - -
Cone4ag0199 524 CDD GMPK 332 449 - -
Cone4ag0199 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 516 IPR027417 -
Cone4ag0199 524 Gene3D alpha/beta hydrolase 28 235 IPR029058 -
Cone4ag0199 524 SMART gk_7 329 514 IPR008145 -
Cone4ag0199 524 Gene3D - 332 504 IPR027417 -
Cone4ag0199 524 ProSiteProfiles Guanylate kinase-like domain profile. 330 511 IPR008144 -
Cone4ag0199 524 NCBIfam guanylate kinase 332 511 IPR017665 GO:0004385(InterPro)|GO:0006163(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0199 K00942 - - csv:105434415 387.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0530 Cone-Chr17:2634688 Cone4ag0199 Cone-Chr4:925969 9.87E-77 dispersed
Cone14ag0813 Cone-Chr14:4849567 Cone4ag0199 Cone-Chr4:925969 1.27E-115 wgd
Cone15ag0812 Cone-Chr15:5047525 Cone4ag0199 Cone-Chr4:925969 1.72E-118 wgd
Cone4ag0199 Cone-Chr4:925969 Cone7ag0209 Cone-Chr7:891752 7.58E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g419 . . . . . . . . . . Cma06g01440 . Car06g01242 . . Cpe08g00235 . Bhi01g00866 Tan10g0900 Cmetu09g0387 . Hepe05g1515 . Lcy11g1494 . . . . . . . Cone14ag0814 Cone15ag0812 . Cone4ag0199 Lsi05g01462 . . Cme06g00652 . . . . . . . . . Cmo06g01442 . . . . . . . . . . . . . . Cla05g00584 Cam05g0642 Cec05g0651 Cco05g0646 Clacu05g0636 Cmu05g0604 Cre05g0673 . Csa03g01379 Chy06g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004090 1 4 1 1 1 1 2 1 1 2 1 1 2 3 2 2 1 2 2 1 2 1 1 1 1 1 1 2 1 0 43