Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag0207 | ATGGGTGTTTCTTCAAGCAGTAGAAGACGGCACAACAACCCACCACCTCGCGGCCACTACCTCTCCTCCTCTTACTATTACCCCTCCGAACCCCCTTCTCTACCTCCGCAGCCTCATCCTCCTCCTTCCCCTTCTCCGCATAACCGCCAATACGCTAATCCCAATCCAACTATGATCGCACCAACCTCCGCCGCCGCCGCCGGCTATCCTCCACCGCACCATAACCCTTATCCTACACCTCCTCCTCCACTGCCGCCTAACGCCTACTACTTTTCCGGCGGGTACAATTCCTGTAATTACGCCACCTCTACAGTCGGTCGGTTCAACTACCACCCTTACTACGCCAATCAGAGTAGTAGTAATGGGTGGTCTGCAATTCGGCCCCATGTGGCGGGTCCCGCATTGCCGCCGCCTCCACCTCCGCCTGTGCCTTACGTTGACCACCAGCAAGCAAAGAAGGTCAAAAATGATGTGAATGTGCATAAAGATACTCTGCGTCTCGAGGTAGATGAGCGAAATCCCGATCATCACTTGGTTTCTTTCGTTTTTGATGCCTTATATGATGGCAGCATTACAATCTTCTATTTTGCCAAGGAAGAATTAAACTGTAGATTTGTTCCGAATTTCCCAGAAGCATTCACGCCAGTAAAAGTCCCCTTTCAGAAAGGTCCAGGCCAGAAATTTCTCCAGCCTTCAGGGACGGGCATCGACTTAGGATTCTTCGATTTGGACGATCTCGCAAAACCATCACCTGGAGAAGAGGTCTTCCCTCTTGTCATATCAGCCGAGACAACCTTTCCATCCCAGTCTTTGGATGATGAAGATAGTGGGGCCGAGCCTCCTCTATCTGATACTACTAATTCTCATTTGCAGATCACTCAAGCCGTCCTAGAAAAACAAAATGGTGGCCCATTCCATGTTCGGGTTGTTCGGCAGTTACTATGGATTGATAAGGTCCGTTATGAACTCCGTGAGATATTCGGATTATCTACCTCTTCAGAAATGAATTTTGACGATAATGACCCTGGAAAGGAGTGTGTAATTTGCATGACCGAACCTAAGGATACTGCTGTCATTCCTTGCCGACATATGTGCATGTGTAGTGGTTGTGCCAAGGAACTGAGGCGTCAATCGAATAAGTGCCCGATATGTCGGCAACCCATTGAAGAACTTATAGAGATCAAGGTAAATAATGGCGATCAGTGA | 1206 | 48.92 | MGVSSSSRRRHNNPPPRGHYLSSSYYYPSEPPSLPPQPHPPPSPSPHNRQYANPNPTMIAPTSAAAAGYPPPHHNPYPTPPPPLPPNAYYFSGGYNSCNYATSTVGRFNYHPYYANQSSSNGWSAIRPHVAGPALPPPPPPPVPYVDHQQAKKVKNDVNVHKDTLRLEVDERNPDHHLVSFVFDALYDGSITIFYFAKEELNCRFVPNFPEAFTPVKVPFQKGPGQKFLQPSGTGIDLGFFDLDDLAKPSPGEEVFPLVISAETTFPSQSLDDEDSGAEPPLSDTTNSHLQITQAVLEKQNGGPFHVRVVRQLLWIDKVRYELREIFGLSTSSEMNFDDNDPGKECVICMTEPKDTAVIPCRHMCMCSGCAKELRRQSNKCPICRQPIEELIEIKVNNGDQ | 401 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 952688 | 954754 | + | Conep04aG0021600.1 | Cone4ag0207 | 435185 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag0207 | 401 | Pfam | Zinc finger, C3HC4 type (RING finger) | 344 | 390 | - | - | |
| Cone4ag0207 | 401 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
| Cone4ag0207 | 401 | SUPERFAMILY | RING/U-box | 329 | 391 | - | - | |
| Cone4ag0207 | 401 | MobiDBLite | consensus disorder prediction | 29 | 49 | - | - | |
| Cone4ag0207 | 401 | SMART | ring_2 | 346 | 384 | IPR001841 | - | |
| Cone4ag0207 | 401 | CDD | mRING-HC-C3HC5_MGRN1-like | 344 | 385 | IPR045195 | - | |
| Cone4ag0207 | 401 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 329 | 395 | IPR013083 | - | |
| Cone4ag0207 | 401 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 330 | 395 | - | - | |
| Cone4ag0207 | 401 | ProSiteProfiles | Zinc finger RING-type profile. | 346 | 385 | IPR001841 | - | |
| Cone4ag0207 | 401 | PANTHER | MAHOGUNIN | 63 | 398 | IPR045194 | GO:0016567(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0253 | Cone-Chr10:1216381 | Cone4ag0207 | Cone-Chr4:952688 | 3.16E-77 | dispersed | |
| Cone4ag0207 | Cone-Chr4:952688 | Cone7ag0215 | Cone-Chr7:920899 | 7.91E-210 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag0207 | K27504 | - | csv:101203938 | 484.567 |