Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0209 ATGTCTTATATTGCTGTGGAGAGAAGCAGGAGAAAGCAGATGAATGAGCATCTCAAGATCTTACGCTCCATCACCCCGTGTTTCTATATCAAAAGGGGAGATCAAGCATCGATAATAGGGGGTGCGATCGAGTTCATCAAGGAGTTGCACCAAATTCTACAGTCATTGGAATCCAAGAAACGAAGGAAGAGCCTGAGCCCTAGTCCTGGTCCAAGCCCTAGGAAAATACTATTGCAGCACTCAAACCAGCTTACTGATTTTCATCATCATCATTATGGTCCAGTACTACGTCAGTTGATCGACAGCCCTCTGATTCGGTTTGATGGGATTAAGGTTAATAAGGAACTTCACGGAACATGTTACAACTCTTCGTTTGCTGACGTGGAAGCAGAGATATCAGGGCCAAACGTGGTGTTGAAAATTATATGCAGGCGAATACCAGGTCAGCTGGTCAAGATTATCACTGTGTTGGAGAAGCTCTCGTTTGAGGTCCTACATCTCAACATCAGTAGCATGGAAGACACAGTTCTATACTCTTTCATTGTTAAGGTATTAACGATATACTAA 567 43.21 MSYIAVERSRRKQMNEHLKILRSITPCFYIKRGDQASIIGGAIEFIKELHQILQSLESKKRRKSLSPSPGPSPRKILLQHSNQLTDFHHHHYGPVLRQLIDSPLIRFDGIKVNKELHGTCYNSSFADVEAEISGPNVVLKIICRRIPGQLVKIITVLEKLSFEVLHLNISSMEDTVLYSFIVKVLTIY 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 963164 963836 - Conep04aG0021800.1 Cone4ag0209 435187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0209 188 PANTHER TRANSCRIPTION FACTOR FAMA 1 184 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cone4ag0209 188 Pfam Helix-loop-helix DNA-binding domain 5 50 IPR011598 GO:0046983(InterPro)
Cone4ag0209 188 FunFam Transcription factor MUTE 1 66 - -
Cone4ag0209 188 SMART finulus 4 55 IPR011598 GO:0046983(InterPro)
Cone4ag0209 188 Gene3D - 1 64 IPR036638 GO:0046983(InterPro)
Cone4ag0209 188 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983(InterPro)
Cone4ag0209 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 67 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0209 Cone-Chr4:963164 Cone4ag0399 Cone-Chr4:1815296 1.48E-38 dispersed
Cone11ag0909 Cone-Chr11:7482472 Cone4ag0209 Cone-Chr4:963164 1.96E-07 wgd
Cone4ag0209 Cone-Chr4:963164 Cone7ag0217 Cone-Chr7:935531 5.92E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45903 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0209 - - - 0.0