Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0210 ATGAAGGCCTCGTTTGATCGTCAAGACGAGCCAGCATCGATTATTTTCTCAAACTACACTTCAAATAGCGGCCACGTCCCTAAAGTATGCAAGCATGTTGATCAAGAAATTGGATCTTATACTAATCCTACTATGTCAGAAGATGTTCACGATGATATCATCGTGATCACCAAGTGCTGCAACTCATCCGACCTCCTCTCCCGCCTCCGTGATGGATTAAATCTAAACAACACGCGTTCAGTAATTGCAGAGATGCTTGGAACATTCATATTGATGTTCTGTGTGTGTGGGATATTTGCAAACACACAGCATCGTGGAGAAAAAGGAGCTGTGGGCCTTGTTGAGTATGCAGCCACAGCGGGATTAACAGTCATCGTTGTGATTTTCTGTGTGGGACCCATCTCTGGTGCCCATGTTAATCCTTCTGTTACTCTAGCGTTGGCTACCTTTGGCCATTTTCCATGGTCCAAGGTTCCTTGTTATATATCGGCACAAATAATGGGGTCTGTGTTTGCAACATATACCGGAAAGTTCGTCTACGGCTTAAAACCCCAAGTTGTTACCAATCAGCCACTTCAAGGATGCTATTCTGCTTTCTGGGTCGAGCTAATTGCAACTTCTATCATCATGTTCCTCGCTGCTTCGCTATATTGTGAAACACAATCCGTGGGCCCAGCTTTGTCTGGTGTTGTGGTTGGAATGGCTATTGGGTTGGCTGTACTAATCACAGCGCCCGTTTCAGGTGGATCAATGAACCCAGCAAGATCGTTAGGGCCTGCAATTGTTTCATGGGATTTTAGTAACATATGGATATATGTCGCTGCTCCCACAATTGGAGCTCTTCTTGGTCTTGTCCTTTTCCGGTTTCTACGTCTCAGTCATAACAACAGGCCTTCTTCTTAG 903 45.07 MKASFDRQDEPASIIFSNYTSNSGHVPKVCKHVDQEIGSYTNPTMSEDVHDDIIVITKCCNSSDLLSRLRDGLNLNNTRSVIAEMLGTFILMFCVCGIFANTQHRGEKGAVGLVEYAATAGLTVIVVIFCVGPISGAHVNPSVTLALATFGHFPWSKVPCYISAQIMGSVFATYTGKFVYGLKPQVVTNQPLQGCYSAFWVELIATSIIMFLAASLYCETQSVGPALSGVVVGMAIGLAVLITAPVSGGSMNPARSLGPAIVSWDFSNIWIYVAAPTIGALLGLVLFRFLRLSHNNRPSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 965691 967003 + Conep04aG0021900.1 Cone4ag0210 435188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0210 300 PANTHER AQUAPORIN NIP2-1 70 293 IPR034294 -
Cone4ag0210 300 SUPERFAMILY Aquaporin-like 75 297 IPR023271 -
Cone4ag0210 300 ProSitePatterns MIP family signature. 138 146 IPR022357 -
Cone4ag0210 300 Gene3D Glycerol uptake facilitator protein. 47 299 IPR023271 -
Cone4ag0210 300 PRINTS Major intrinsic protein family signature 120 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone4ag0210 300 PRINTS Major intrinsic protein family signature 270 290 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone4ag0210 300 PRINTS Major intrinsic protein family signature 201 219 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone4ag0210 300 PRINTS Major intrinsic protein family signature 233 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone4ag0210 300 PRINTS Major intrinsic protein family signature 79 98 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone4ag0210 300 PRINTS Major intrinsic protein family signature 157 176 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone4ag0210 300 Pfam Major intrinsic protein 76 285 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0210 Cone-Chr4:965691 Cone4ag0541 Cone-Chr4:2431182 1.13E-48 dispersed
Cone4ag0210 Cone-Chr4:965691 Cone7ag0218 Cone-Chr7:940247 9.09E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0210 K09874 - mdm:103403895 308.531