Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0218 ATGCAAGAAATCTTCGGATCAGTTCGATCTTCCTTGAGGTTTCCAGGTGGAGACGATGAAGGAGGATTTGGTGGCCTGGTCGAGAAGATAGGCTCGAGCATCAGAAAATCTCGAATCGGATTGTTTTCTAGACAGTCGCTTGCGGCTCTGCCTCCTGCAATTAAAGTTGATGGGACTCCTCCGATCAGATGGCGGAAAGGTGAGTTGATTGGCTGTGGTGCATTTGGTCGGGTCTATATGGGAATGAACCTTGATTCTGGAGAGCTTCTTGCTGTTAAACAGGTCTCAATTGCGGCCAATAGTGCTTCAAGGGAGAAAACACAGGCTCACATTCGAGAATTAGAGGAAGAGGTGAAACTTCTTAAGAATCTTTCACATCCCAATATCGTTAGATATCTTGGAACCGCTAGAGAGGCAGAATCATTGAATATTCTGCTGGAGTTTGTTCCTGGGGGTTCCATATCATCCCTCTTGGGAAAATTTGGTTCTTTTCCTGAGTCTGTTATAAAAATGTATACAAAGCAGCTCTTACTTGGTCTCGAATACCTTCACAAGAATGGAATCATGCACAGGGATATAAAGGGTGCAAATATTCTTGTTGACAATAAAGGATGTATAAAACTTGCTGACTTTGGTGCCTCCAAAAAAGTTGTAGAGCTGGCTACTGTTAATGGTGCTAAGTCAATGAAGGGCACACCCTATTGGATGGCTCCGGAAGTTATTCTCCAGACTGGTCATAGATTCTCTGCCGATATATGGAGTGTTGGATGCACTGTAATTGAAATGGCGACAGGGAAGCCTCCTTGGAGCCAACAATATCAAGAGGTTGCTGCACTTTTCCATATAGGGACTACTAAATCTCATCCACCCATCCCTGAGCAACTCTCTGCTGAGGCAAAGGATTTTCTGCTAAAATGCTTACAAAAGGAACCAGATTCAAGGCCCTCCGCATCAGACTTGCTACAGCATCCATTTGTTTCACGAGAGCACCGAGATCCTCATCAAGGACTTCGCACCTCAATTATGGAATCTCAAAACCAAACAACACCACCCGGACTGAATCTTAATAACCCCATGACTTCTTCGATCAGAAGATCAACCTGCATGGGGTTAAAGGATGTTTGTGAAATGGGTAGTATGAGGTCCTCAACCATATTTCCTGAGAATTCATTTGGACTAGGATCCCAGTGGGGCTCTAGCAATTTTGATGATGATATGTGTCAGATAGATGATAAAGATGATATGATGCTCGGCCCATCTGTAAATTACAAGTCAGTTATGTTGTCCAGTGACTTAAATAAGAGTTTTAATCCTATGAGTGAGCCTAATGATGACTGGCCATGTAAGTTTGGTGAAAGTCTGGAACCGGACGGAAATAGAATGAACTTATCTCCTGCCGGTGACCCACGAGCATCTGCTAAGGGGGACATTGGCTTCACATTTCCGTGTGGTCCATCTGCAGTTGATGATGATGATGAAGTTACTGAGTCAAAGATTAGAGCCTTCCTGGATGAGAAGGCTTTAGATCTGAAGAAATTACAAACACCTCTGTACGAAGAGTTCTACAGCACATTAAGTGCAGTTGGTACTCCAGCAGCGGCAGCTTCTGTAAAAGGTGAAAATGTTTCTAGTGTTTTAAACCTACCTCCAAAAAGCAAGTCACCAAGTCGATTTCCCAGTAGAAGATTTTCCACCCTTGGCGGTTCTACGACCACGAGCCCTAATAGTCATATAAAATATGGGAGCAGCGTGCATGATAGAGCTTTGCAGGAAATTCCGCTGCCTCATGAGAGTGAATTCAAAGAAATGTTTATTGACCCAAAACAAGAATCCTTTATATCAAGTTTCTCAGAAAGACAACGAAAATGGAAAGAAGAGCTTGATGAAGAGCTTCAAAGGAAGCGAGAAATCATCCGTCAAGCAGGTGCAGGAGCAAAATCACCGTCTGTAAATCGACAGAAAGATCGCCTACCATTTGCATTTTCAGGCAAATAG 1995 43.41 MQEIFGSVRSSLRFPGGDDEGGFGGLVEKIGSSIRKSRIGLFSRQSLAALPPAIKVDGTPPIRWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKTQAHIRELEEEVKLLKNLSHPNIVRYLGTAREAESLNILLEFVPGGSISSLLGKFGSFPESVIKMYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATVNGAKSMKGTPYWMAPEVILQTGHRFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSAEAKDFLLKCLQKEPDSRPSASDLLQHPFVSREHRDPHQGLRTSIMESQNQTTPPGLNLNNPMTSSIRRSTCMGLKDVCEMGSMRSSTIFPENSFGLGSQWGSSNFDDDMCQIDDKDDMMLGPSVNYKSVMLSSDLNKSFNPMSEPNDDWPCKFGESLEPDGNRMNLSPAGDPRASAKGDIGFTFPCGPSAVDDDDEVTESKIRAFLDEKALDLKKLQTPLYEEFYSTLSAVGTPAAAASVKGENVSSVLNLPPKSKSPSRFPSRRFSTLGGSTTTSPNSHIKYGSSVHDRALQEIPLPHESEFKEMFIDPKQESFISSFSERQRKWKEELDEELQRKREIIRQAGAGAKSPSVNRQKDRLPFAFSGK 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 999361 1003333 + Conep04aG0022700.1 Cone4ag0218 435196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0218 664 Coils Coil 620 640 - -
Cone4ag0218 664 CDD STKc_MAPKKK 63 326 - -
Cone4ag0218 664 MobiDBLite consensus disorder prediction 548 577 - -
Cone4ag0218 664 FunFam Serine/threonine-protein kinase STE11 61 154 - -
Cone4ag0218 664 MobiDBLite consensus disorder prediction 639 664 - -
Cone4ag0218 664 FunFam Mitogen-activated protein kinase kinase kinase 2 63 352 - -
Cone4ag0218 664 Pfam Protein kinase domain 65 326 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0218 664 ProSiteProfiles Protein kinase domain profile. 64 326 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0218 664 SUPERFAMILY Protein kinase-like (PK-like) 63 327 IPR011009 -
Cone4ag0218 664 Gene3D Transferase(Phosphotransferase) domain 1 63 356 - -
Cone4ag0218 664 Coils Coil 97 124 - -
Cone4ag0218 664 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524(InterPro)
Cone4ag0218 664 SMART serkin_6 64 326 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0218 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0218 664 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 60 331 IPR050538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0732 Cone-Chr10:3706157 Cone4ag0218 Cone-Chr4:999361 1.86E-241 dispersed
Cone14ag0486 Cone-Chr14:2365219 Cone4ag0218 Cone-Chr4:999361 5.78E-10 dispersed
Cone15ag0514 Cone-Chr15:2507752 Cone4ag0218 Cone-Chr4:999361 1.25E-07 dispersed
Cone3ag0774 Cone-Chr3:3980942 Cone4ag0218 Cone-Chr4:999361 3.05E-241 dispersed
Cone4ag0218 Cone-Chr4:999361 Cone8ag0019 Cone-Chr8:140232 1.02E-82 dispersed
Cone10ag0863 Cone-Chr10:4455192 Cone4ag0218 Cone-Chr4:999361 9.22E-64 transposed
Cone11ag0732 Cone-Chr11:5080800 Cone4ag0218 Cone-Chr4:999361 4.24E-68 transposed
Cone10ag0698 Cone-Chr10:3519546 Cone4ag0218 Cone-Chr4:999361 3.48E-36 wgd
Cone4ag0218 Cone-Chr4:999361 Cone7ag0228 Cone-Chr7:966856 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82725 PF01764 Lipase_3 6.90E-34 CL0028 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0218 K20606 - rcu:8271606 896.345