Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0220 ATGATTTCAGATGTAATTTCCGATTCCTTGGATGATATTACAGTTGGTCAGACACTTAAGCGTTCATATGTGACAGAGAAGTTTGTCGTTTTACAAAGACATAGCAGACAAAGTAGTGGAAATGAGAAACCTCAAGAATATGTGCAGAAAGATCTCTTACATCAAAGAAGCTGCCTCTCTCTGGAGGTTGTCTCTGGTCCATCCCGTGGACTTCAATTTTCAATACAGTCAACAGATAGCTCTAAGCTTCCACTGACCCTTGGAAGAGTGTCTTCAAGTGATCTACAGCTAAAGGATTCGGAGGTGTCTGGGAAGCATGCAATGATAAGCTGGAATATAAAGTGGGAGCTGGTGGACATGGGTAGCCTAAATGGAACACTTTTGAATTCTCAACCAATCAACCATCCCGATTACGGAAGTAGACATTGGGGAGATCCAATTGAGCTTACAAGTGGCGACATAATAACTCTTGGTACAACCTCCAGAGTATATGTTCAAATTACACCTGCAACTGAGAGTGAGGTTCCATTTGGAGTTGGTATGGCTTCAGATCCTATGGCTTTTCGGCGAGGAGGAAAGAAGCTTGCTATGGAAGATGTATCCTATTATGAATGGCCCCTTGCTGGAACTGATCAGTTTGGATTATTTGGTATATGCGATGGACATGGCGGAGTTGCGGCTGCTAGATCTGCTAGCGAAATTTTTCCAGAGAGGGTTGCTACCATTTTGTCGGATTCAATGAAAAGGGAAAGAGTTTTATCTCTATGTGACGCTTCAGATGTTCTCAGAGATGCATTTTCTCAGACAGAGGCATCCATGAATCACCATTACGAGGGTTGTACTTCAACATTGCTTCTGGTATGGGCCGATGGAAATGACAAGTACTTTGCGCAATGTGCAAATGTTGGAGACTCTGCTTGTGTTATGAATGTTGATGGGAAACAGATAAAGATGACTGAAGACCATAGAATAACTAGCTATTTGGAAAGACTTAGAATTGAAAAAACAGGAGAGCCATTGAAAGATGGGGAGACGCGTCTATGTGGTTTGAACCTAGCACGTATGCTAGGAGACAAATTTCTCAAACAACAAGATAGTCGTTTTAGTTCAGAGCCTTATGTAAGTCAAGTTGTTCATCTTGATCAAGCACGCAGTGCATTTGCACTCATGGCCAGTGATGGCTTATGGGATGTGATGAGTCTCAAGAAAGCAATTCAGCTAGTTCTTCAGGCAAGGGAGAGATACTGTATGGACTCGGAGAATCCGGCCGAAAAGATTGCAAGTTTTTTGTTGAGTGAGGCGAGAACACTGCGGACTACGGACAACACGTCAATACTTTTCTTAGATTTTAACACTTCCCATAGAAATTCTTGTAAAGTTGAATCATAA 1389 42.12 MISDVISDSLDDITVGQTLKRSYVTEKFVVLQRHSRQSSGNEKPQEYVQKDLLHQRSCLSLEVVSGPSRGLQFSIQSTDSSKLPLTLGRVSSSDLQLKDSEVSGKHAMISWNIKWELVDMGSLNGTLLNSQPINHPDYGSRHWGDPIELTSGDIITLGTTSRVYVQITPATESEVPFGVGMASDPMAFRRGGKKLAMEDVSYYEWPLAGTDQFGLFGICDGHGGVAAARSASEIFPERVATILSDSMKRERVLSLCDASDVLRDAFSQTEASMNHHYEGCTSTLLLVWADGNDKYFAQCANVGDSACVMNVDGKQIKMTEDHRITSYLERLRIEKTGEPLKDGETRLCGLNLARMLGDKFLKQQDSRFSSEPYVSQVVHLDQARSAFALMASDGLWDVMSLKKAIQLVLQARERYCMDSENPAEKIASFLLSEARTLRTTDNTSILFLDFNTSHRNSCKVES 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1013385 1016338 + Conep04aG0022900.1 Cone4ag0220 435198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0220 462 Gene3D - 53 185 - -
Cone4ag0220 462 FunFam Protein phosphatase 2C 70 186 457 - -
Cone4ag0220 462 PANTHER PROTEIN PHOSPHATASE 2C 191 450 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone4ag0220 462 SUPERFAMILY SMAD/FHA domain 57 165 IPR008984 GO:0005515(InterPro)
Cone4ag0220 462 CDD FHA_PP2C70-like 59 165 - -
Cone4ag0220 462 ProSiteProfiles Forkhead-associated (FHA) domain profile. 85 133 IPR000253 GO:0005515(InterPro)
Cone4ag0220 462 SUPERFAMILY PP2C-like 191 451 IPR036457 -
Cone4ag0220 462 ProSiteProfiles PPM-type phosphatase domain profile. 178 450 IPR001932 -
Cone4ag0220 462 Pfam Protein phosphatase 2C 186 443 IPR001932 -
Cone4ag0220 462 SMART FHA_2 84 133 IPR000253 GO:0005515(InterPro)
Cone4ag0220 462 FunFam Protein phosphatase 2C 70 54 185 - -
Cone4ag0220 462 Gene3D - 186 460 IPR036457 -
Cone4ag0220 462 CDD PP2Cc 190 450 IPR001932 -
Cone4ag0220 462 Pfam FHA domain 86 158 IPR000253 GO:0005515(InterPro)
Cone4ag0220 462 ProSitePatterns PPM-type phosphatase domain signature. 215 223 IPR000222 GO:0043169(InterPro)
Cone4ag0220 462 SMART PP2C_4 172 448 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0220 Cone-Chr4:1013385 Cone4ag1725 Cone-Chr4:12767565 4.64E-20 dispersed
Cone15ag0823 Cone-Chr15:5471335 Cone4ag0220 Cone-Chr4:1013385 6.09E-246 wgd
Cone4ag0220 Cone-Chr4:1013385 Cone7ag0230 Cone-Chr7:979564 1.44E-302 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0220 K01090 - mdm:103414648 696.427