Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0224 ATGGATGCTACAACTGGAAATTCACAACAGAGGCCATTTTCAATAAAGTTGTGGCCTCCAAGCCATAACACAAGAAAAATGCTTGTGGAGCGGATGACAAACAATCTCACTGCTAGATCCATTTTCACCCAGAAATATGGTATTCTTAGCAAGGAAGAGGCTGGGAAGGAATCAGCACGGATTGAGAATGTCGCATTTGCTACAGCAGATCAAAACTATGAAAATGAGCCAGATGGTGATGGAGGCTCTGCAGTGCAACTTTATGCCAAGGAATGTAGCAGACTCCTCATTGAAGTTCTTAAGAAAGGCCCTAAAAGCGAGGCAGCCACAGAAGATGTAGTAACATCTGATAGTAATGATAATACAAATGCTCCTCGTGAAACCTGTTTCGATATATCTAAGGGACAACGTGCCTTCATCGAAGCAGAGGAGGCTGAAGAGCTTCTAAAGCCATTGAAGGAGCCTGGAAATTCTTACACTAAAATATGCTTAAGCAATAGAAGCTTTGGATTAGGAGCAGCCCATGTTGCTGAGCCCATTCTGGTTTCCATCAAAGATCAGTTGAAGGAAGTTGACCTGTCAGATTTCATTGCAGGAAGGCCAGAAGGGGAGGCTCTAGATGTCATGAAGATATTCGCAAGTGCACTTGCAGGCAGCGTCTTGAGGTCTTTGAACCTCTCTGACAATGCCTTAGGTGAGAAAGGTGTTAGGGCATTTGGGGCGCTACTAAAGTCACAGACTTGCTTGGAGGAGCTATATTTGATGAATGATGGCATTTCGGAAGAAGCTGCCAGAGCCGTGTCTGAGTTGATTCCTTCCACAGAGAAGCTTAAAGTTCTTCAGTTCCATAACAATATGACAGGAGATGAAGGGGCAATTGCTATCGCAGAGGTTGTGAAGCGTTCTCTTTTATTGGAAGATTTCCGTTGCTCCTCTACCAGAATAGGCTTTGAAGGAGGTGTTGCCTTGTCTGTTTCATTTGAGACATGTCCCCATTTGAAGAAGCTTGACCTGAGGGACAACATGTTTGGTGTAGAGGCCGGATTGGCATTAGGGAAAGCTCTTTCAAAACATGCAGGTTTGAAAGAAGTTTACTTGAGCTATCTGAATTTGGAAGATGAAGGCGCAATTACCATAGTCAATGCTCTTAAGGAAACTGCTCCTGGACTTGAAGTCTTGGAAATGGCTGGAAATGACATAACCTCTGAAGCTGCCTCTATTATAGCGGCTTGTATTGCATCAAAGAAGAGTTTGATCAAGTTGAATTTGGCTGAGAATGAACTCAAGGATGAAGGAGCAATCCATATAGGCAAGGCTTTAGGGGGTCACACCCAGTTAAAGGAAGTTGACATGAGTACCAACTTGATAAGGAGGGTAGGGGCTCGGGTTTTGGCTCAGACTGTGGTTCAGAAGCCTGGATTTGTTTTGTTGAACATCAATGGGAATTTCATCTCCGATGAAGGTGTTAATGAAGTGAAGGATATTTTTAAGAAATTTCCTGACTTGCTTGGATTGTTGGATGAGAATGATCCTGAAGGAGGAGAAGATTATGAAGCAGATGCAGAAGGTGACAACAATGAGGTTGAACTGGAATCCAAACTGAAGAATCTTGACGTTGATGAAGAGGATTAG 1632 43.38 MDATTGNSQQRPFSIKLWPPSHNTRKMLVERMTNNLTARSIFTQKYGILSKEEAGKESARIENVAFATADQNYENEPDGDGGSAVQLYAKECSRLLIEVLKKGPKSEAATEDVVTSDSNDNTNAPRETCFDISKGQRAFIEAEEAEELLKPLKEPGNSYTKICLSNRSFGLGAAHVAEPILVSIKDQLKEVDLSDFIAGRPEGEALDVMKIFASALAGSVLRSLNLSDNALGEKGVRAFGALLKSQTCLEELYLMNDGISEEAARAVSELIPSTEKLKVLQFHNNMTGDEGAIAIAEVVKRSLLLEDFRCSSTRIGFEGGVALSVSFETCPHLKKLDLRDNMFGVEAGLALGKALSKHAGLKEVYLSYLNLEDEGAITIVNALKETAPGLEVLEMAGNDITSEAASIIAACIASKKSLIKLNLAENELKDEGAIHIGKALGGHTQLKEVDMSTNLIRRVGARVLAQTVVQKPGFVLLNINGNFISDEGVNEVKDIFKKFPDLLGLLDENDPEGGEDYEADAEGDNNEVELESKLKNLDVDEED 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1023815 1026564 - Conep04aG0023300.1 Cone4ag0224 435202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0224 543 Gene3D Ribonuclease Inhibitor 132 413 IPR032675 -
Cone4ag0224 543 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 7 542 IPR045203 GO:0005096(InterPro)
Cone4ag0224 543 MobiDBLite consensus disorder prediction 508 543 - -
Cone4ag0224 543 Pfam WPP domain 14 109 IPR025265 -
Cone4ag0224 543 SMART LRR_RI_2 358 385 - -
Cone4ag0224 543 SMART LRR_RI_2 274 301 - -
Cone4ag0224 543 SMART LRR_RI_2 330 357 - -
Cone4ag0224 543 SMART LRR_RI_2 218 245 - -
Cone4ag0224 543 SMART LRR_RI_2 443 470 - -
Cone4ag0224 543 SMART LRR_RI_2 246 273 - -
Cone4ag0224 543 SMART LRR_RI_2 387 414 - -
Cone4ag0224 543 SMART LRR_RI_2 415 442 - -
Cone4ag0224 543 SMART LRR_RI_2 471 498 - -
Cone4ag0224 543 MobiDBLite consensus disorder prediction 107 127 - -
Cone4ag0224 543 MobiDBLite consensus disorder prediction 508 525 - -
Cone4ag0224 543 SUPERFAMILY RNI-like 128 518 - -
Cone4ag0224 543 Pfam Leucine Rich repeat 221 239 IPR001611 GO:0005515(InterPro)
Cone4ag0224 543 Pfam Leucine Rich repeat 416 434 IPR001611 GO:0005515(InterPro)
Cone4ag0224 543 Pfam Leucine Rich repeat 329 351 IPR001611 GO:0005515(InterPro)
Cone4ag0224 543 Gene3D Ribonuclease Inhibitor 414 527 IPR032675 -
Cone4ag0224 543 Gene3D WPP domain 14 111 IPR038214 -
Cone4ag0224 543 MobiDBLite consensus disorder prediction 111 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0224 K14319 - - csv:101208192 774.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0234 Cone-Chr7:992943 Cone4ag0224 Cone-Chr4:1023815 1.49E-152 transposed
Cone11ag0916 Cone-Chr11:7526359 Cone4ag0224 Cone-Chr4:1023815 3.11E-105 wgd
Cone18ag0650 Cone-Chr18:3376340 Cone4ag0224 Cone-Chr4:1023815 6.08E-108 wgd
Cone4ag0224 Cone-Chr4:1023815 Cone7ag0233 Cone-Chr7:992382 2.08E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0234 Cone4ag0224 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69