Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0225 ATGGAGATTCAAAGGCGCCAAGATCAGGGCGTGCCGGAGAGGAAGGGGCAGAAGCGGAAGCTGGAAGAGGAAAACGAAGAGGAGAGGGAGATCTGTGTTCCGTCCGGCGACGACCGGAAAACGATACTCTGTGACGTGACTGCTCAGGTTCAAATCCTCAACTCGACCTTCTCTTGGAGCGAAGCCGATCGAGCTGCCGCTAAGCGCGCCACTCACGTCCTCGCGGAGCTGGCCAAGAATGAAGAGGTAGTAAACGTGATTGTTGAAGGTGGTGCTGTACCGGCTTTGGTCAAGCATCTGCAAACTCCGCCCTCCGTTGAAGGTGATCTTAGTCCGAAGCCATTTGAGCACGAGGTTGAGAAAGGGAGTGCTTTTGCATTAGGGCTTCTAGCTGTTAAGCCAGAACACCAACAGCTGATAGTAGACACTGGTGCATTGTCTCATCTGGTTGACCTTTTAAAGAGGCACAAGGATAGTCTGAGTTCTCGGGCTGTGAACAGTGTCATTCGTAGAGCTGCCGATGCGATCACTAACCTGGCTCATGAGAATAGTAGCATTAAAACCCGCGTCAGAATGGAAGGAGGAATTCCGCCTCTTGTTGAGTTGCTTGAATTTACTGACACAAAGGTGCAAAGAGCAGCTGCCGGTGCATTGCGAACTCTGGCATTTAAGAACGACGAAAATAAGAATCAGATTGTTGATTGCAATGCTCTTCCAACCCTCATTCTGATGCTACGGTCAGAGGATACTGCTATACATTATGAAGCGGTTGGTGTTATTGGAAATCTAGTTCACTCGTCTCCAAATATAAAGAAAGAGGTTCTTCTTGCTGGAGCCCTGCAACCAGTTATTGGTTTACTCAGTTCCTGCTGCCCTGAAAGCCAAAGGGAGGCAGCTTTGTTGCTTGGGCAATTTGCTGCAACTGATTCAGATTGCAAGATTCATATTGTACAGAGGGGGGCTGTTCAACCTCTAATTGAGATGCTTCAATCACCAGATGTACAGCTGAGGGAAATGTCTGCCTTTGCATTGGGGAGGTTGGCACAGGATACACACAATCAGGCGGGTATCGCTCATAATGGTGGTTTAGGACCATTACTAAAGCTTCTTGATTCCAAAAATGGGTCTCTGCAGCATAATGCAGCATTTGCACTTTATGGCCTTGCTGATAATGAGGATAATGTGTCCGATTTTATTAGGGTGGGAGGTGTTCAAAAGCTGCAGGATGGAGAGTTTATAGTTCAAGCAACTAAAGATTGTGTAGCCAAGACGCTGAAGAGATTAGAGGAGAAGATACATGGACGAGTTTTGAGTCACTTGTTGTATCTGATGCGAGTGGTGGAGAAAGCTGTCCCAAGACGAGTTGCTTTAGCTCTTGCTCACCTTTGTTCACCAGATGATCTTAGAACCATATACATTGATAACAATGGGTTGGAGTTGCTTCTTGGTCTTCTTGGTTCTACAAGCATTAAGCAGCAGCTAGATGGTGCTGTGGCTTTGTACAAATTAGCCAACAAAGCGACATCCCTTTCTCCTGTAGATGCTGCTCCCCCATCTCCAACTCCACAGGTTTACTTAGGGGAGCAGTATGTAAACAATCCAACATTATCTGATGTTACTTTTCTGGTTGAAGGAAAATTGTTCCATGCACACAGGATTTGCCTTCTTGCTTCTTCCGATGCATTCCGTGCCATGTTTGATGGTGGTTATCGGGAAAAGGACGCAAGGGATATAGAAATTCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTCATATACACTGGATCAGTGGATGTTTCATTAGATATTGCCCAAGATCTCCTCAGAGCGGCTGATCAGTATCTCTTGGAGGGCCTTAAACGGCTCTGTGAATATACCATCGCACAGGTGAGGATATATCATTGGACAATGTCTCGAGTATGTATGAACTTTCAGAAGCCTTCAATGCCATATCCTTGA 1968 46.14 MEIQRRQDQGVPERKGQKRKLEEENEEEREICVPSGDDRKTILCDVTAQVQILNSTFSWSEADRAAAKRATHVLAELAKNEEVVNVIVEGGAVPALVKHLQTPPSVEGDLSPKPFEHEVEKGSAFALGLLAVKPEHQQLIVDTGALSHLVDLLKRHKDSLSSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVDCNALPTLILMLRSEDTAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCPESQREAALLLGQFAATDSDCKIHIVQRGAVQPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLGPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLSHLLYLMRVVEKAVPRRVALALAHLCSPDDLRTIYIDNNGLELLLGLLGSTSIKQQLDGAVALYKLANKATSLSPVDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGKLFHAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVSLDIAQDLLRAADQYLLEGLKRLCEYTIAQVRIYHWTMSRVCMNFQKPSMPYP 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1031051 1036262 - Conep04aG0023400.1 Cone4ag0225 435203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0225 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 194 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 361 403 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 SUPERFAMILY POZ domain 528 630 IPR011333 -
Cone4ag0225 655 Pfam BTB/POZ domain 532 630 IPR000210 GO:0005515(InterPro)
Cone4ag0225 655 Gene3D - 412 519 IPR011989 -
Cone4ag0225 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 194 229 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 236 278 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 SMART BTB_4 537 634 IPR000210 GO:0005515(InterPro)
Cone4ag0225 655 ProSiteProfiles BTB domain profile. 537 604 IPR000210 GO:0005515(InterPro)
Cone4ag0225 655 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 2 632 IPR044282 -
Cone4ag0225 655 SMART arm_5 183 223 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 SMART arm_5 309 349 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 SMART arm_5 267 307 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 SMART arm_5 80 132 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 SMART arm_5 133 181 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 SMART arm_5 225 265 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 SMART arm_5 350 390 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 SMART arm_5 465 505 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 Gene3D - 46 411 IPR011989 -
Cone4ag0225 655 MobiDBLite consensus disorder prediction 1 32 - -
Cone4ag0225 655 Gene3D Potassium Channel Kv1.1; Chain A 520 649 IPR011333 -
Cone4ag0225 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 91 145 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 Pfam Armadillo/beta-catenin-like repeat 225 264 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 Pfam Armadillo/beta-catenin-like repeat 309 348 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 Pfam Armadillo/beta-catenin-like repeat 190 222 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 CDD BTB_POZ_ARIA_plant 524 632 - -
Cone4ag0225 655 SUPERFAMILY ARM repeat 435 607 IPR016024 -
Cone4ag0225 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 362 IPR000225 GO:0005515(InterPro)
Cone4ag0225 655 SUPERFAMILY ARM repeat 52 409 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0225 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0868 Cone-Chr20:6309037 Cone4ag0225 Cone-Chr4:1031051 2.91E-166 dispersed
Cone4ag0225 Cone-Chr4:1031051 Cone7ag0235 Cone-Chr7:995223 5.91E-291 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g464 . . . . . Bpe14g01175 . . . . Cma06g01423 Cma14g01691 Car06g01226 Car14g01525 Sed02g1251 Cpe08g00251 Cpe03g01425 Bhi01g00836 Tan10g0863 Cmetu06g0635 . . . Lcy11g1523 . . . . . . . . . Cone7ag0235 Cone4ag0225 Lsi05g01437 . . Cme06g00626 Blo02g00552 . . . . . . . . Cmo06g01425 Cmo14g01736 . . . . . . . . . . . . . Cla05g00562 Cam05g0618 Cec05g0628 Cco05g0623 Clacu05g0614 Cmu05g0582 Cre05g0650 . Csa03g01351 Chy06g00596 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008033 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45904 PF01167 Tub 1.10E-109 CL0395 Cone TR