Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0226 ATGGCGCTCCTCTTCATCCTCTCATTCCTCTCCATCCTCTCCTCCTCTCTCTCCCAGACGCCGCCTCTCAGATATTATCTGATTGACTGTGGCGCCACCGTTCGATCGGAAATCGCGGGACTCAGGTGGCTTCCTGACGATGGCTTTGTTTTCAGCGGGACGTCTAAGAATCTCAGTACTGCCGTCCTCGTTCAGACCCTCTCAACCGTCAGATCATTTCCGAGACTTCTTAATCGTAAATTCTGCTACGTCTTCCCCGCGATTCGTGGCCGAAAGTACATGCTAAGGACTACGTACTTCTATGGAGGAATCAACGGCCTGGATTCCCCGCCGGTGTTCGATCAGATTGTGGATGGAACTTTCTGGAGCGTGGTCAACACGACCGAGGATTTCGCTAACGGGCTGTCAACCTATTACGAGGGAGTCTTTGAAGCTCAGGCGAGGACGATCAATTTCTGCATCGGGTCAAATACTTATACTGCCTCTGAACCCTTTATATCGGCTTTAGAGGTCGTGCTCTTGGAAAATTCTTGTTACAACTCCACTGATTTTCGTAATTACAGTTTGAGCTCCGTCGCTAGGCACAATTTTGGGACCAGCGGACCTGTAATACGATATCCAGAAGATCGATTTAATCGATTCTGGGAACCATTTGGAGCAGATAATTCAACTGTAGTGACCAACACGACCGTATCTGTTTCTGGTATTTGGAACCTCCCCCCATCAAGGGTGTTTGAAACCAAACTGACGAGTAGTCCTGGGGAGCCGCTTGAGTTAAATTGGCCGCCTGTATCTCTTCCAAGCTCTAGATACTACATTGCTCTATACTTTGCCAATGATATTGATTCATCTCAGGGCAACTCAAGGATGTTTAACATAAGTGTGAATGGTGTTACATATTATCGGAATTTGGATGTCACCCCAGAAGGTGTTGTTGTCTTTGCAACCATGTGGCCTCTTGATGGTTTTACAAAGATAACTTTGACACCGGCTGCTGGTTCAAACCTTACTCCTTTGATCAGTGGCGGAGAGGTCTTTGAAGTTCTGGCTCTTGGAGGAAGAACTCTCGCCCGAGATGCCGTTGCTATGGAAAGATTGAGGAATGGTTTTGAGAATCCTCCACTTGACTGGATTGGCGACCCTTGTTTGCCCCGTCAGTATTCATGGACAGGCGTTACCTGCTCTGAAGGTCCCAGAATTCGAGTCATCGCACTTAACCTGACAAATATGGACCTTTCTGGATCCCTCTCGCCTAGCATTGCCAAAATGACTGCATTGTCCACCATCTTGCTTAGGAATAACAATCTGTCTGGACCTATTCCTGATCTCAGTTCTCTGAGGATGCTACAGATACTGCACTTGGAAGACAATCAGTTCAGTGGGGAGATTCCCCCATCACTTGGGGACCTGCCTAGTTTACGTGAGCTCTTCTTACAGAACAACAATCTTACGGGTCAAGTTCCAACTGGCCTCACTAGAAAATCCGGATTGACTTTGAGGACTTCTCCTGGAAACAACCTTTCCTCTCCACCCCCATCTTAG 1542 47.73 MALLFILSFLSILSSSLSQTPPLRYYLIDCGATVRSEIAGLRWLPDDGFVFSGTSKNLSTAVLVQTLSTVRSFPRLLNRKFCYVFPAIRGRKYMLRTTYFYGGINGLDSPPVFDQIVDGTFWSVVNTTEDFANGLSTYYEGVFEAQARTINFCIGSNTYTASEPFISALEVVLLENSCYNSTDFRNYSLSSVARHNFGTSGPVIRYPEDRFNRFWEPFGADNSTVVTNTTVSVSGIWNLPPSRVFETKLTSSPGEPLELNWPPVSLPSSRYYIALYFANDIDSSQGNSRMFNISVNGVTYYRNLDVTPEGVVVFATMWPLDGFTKITLTPAAGSNLTPLISGGEVFEVLALGGRTLARDAVAMERLRNGFENPPLDWIGDPCLPRQYSWTGVTCSEGPRIRVIALNLTNMDLSGSLSPSIAKMTALSTILLRNNNLSGPIPDLSSLRMLQILHLEDNQFSGEIPPSLGDLPSLRELFLQNNNLTGQVPTGLTRKSGLTLRTSPGNNLSSPPPS 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1037068 1040443 + Conep04aG0023500.1 Cone4ag0226 435204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0226 513 PANTHER OS07G0107800 PROTEIN-RELATED 25 469 - -
Cone4ag0226 513 FunFam Leucine-rich repeat receptor-like kinase 360 466 - -
Cone4ag0226 513 Gene3D - 191 348 - -
Cone4ag0226 513 Pfam Leucine Rich Repeat 449 470 IPR001611 GO:0005515(InterPro)
Cone4ag0226 513 Pfam Leucine Rich Repeat 472 491 IPR001611 GO:0005515(InterPro)
Cone4ag0226 513 SUPERFAMILY L domain-like 382 512 - -
Cone4ag0226 513 MobiDBLite consensus disorder prediction 487 506 - -
Cone4ag0226 513 Gene3D Ribonuclease Inhibitor 361 513 IPR032675 -
Cone4ag0226 513 Pfam Malectin-like domain 28 348 IPR024788 -
Cone4ag0226 513 MobiDBLite consensus disorder prediction 487 513 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0226 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0226 Cone-Chr4:1037068 Cone20ag1285 Cone-Chr20:8393403 4.62E-36 dispersed
Cone12ag1096 Cone-Chr12:8937190 Cone4ag0226 Cone-Chr4:1037068 1.98E-143 transposed
Cone4ag0226 Cone-Chr4:1037068 Cone7ag0236 Cone-Chr7:1002589 5.21e-317 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g465 . . . . . Bpe14g01176 . . Cmo08g01131 . . . . . . . . . . . . . . . Cla06g00563 Cam06g0603 Cec06g0603 Cco06g0608 Clacu06g0589 Cmu06g0584 Cre06g1350 . . Cone7ag0236 Cone4ag0226 . . . . Blo02g00551 . . Bda13g00134 . . . . . . . Cma08g01159 . Car08g01036 . . Cpe17g00137 Bhi12g01823 . . . Hepe03g0115 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008562 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 6 1 35