Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0233 ATGGGTTCCAGTAGACGAAACACTTCTTCTTCTTCTTCTCTTTCTCAGCCTACTGACCTGTCGATTTCAGGACTAAGTAAAAAGCATCAACATGACCTACAGAATTTGACCCTTACGACCCAACCCTTCAAAACATTCAAATTCTTTGTTTTGGGTGTTCTTCAATATATCAGGCAGTCAATTTTGTATTTGTGGGCAAAGGGCGGTTGGCTTTTGCTTCTGAATACTATTGTGGCAGCAATTGGAGCTCTACTTTTGACTACTGAAGGACCTCATGTTAAGCACGTTAAGGAGATTTTTAAATACGTTGAGTTTGGGTTGTGGTGGGTAGTACTTGGAGTTGCATCTTCAATTGGTCTTGGGTCTGGTTTGCACACTTTTGTTCTTTATCTGGGCCCGCATATCGCCTTTTTTACGCTGAAAGCAGTGCAGTGTGGCCGAGTTGATTTGAAAACAGCTACATATGATACGATACAATTAAAAAGAGGCCCTTCTTGGCTTGACAAAAATTGCTCTGATTTTTGGCCCCCGTTAAACATATCACTACATAATTCATGGGTTCCACTTAGCAGTATATTGCCCATGGTTCAGATAGAGGCTATTTTATGGGGTATTGGTACTGCTCTAGGAGAGCTTCCTCCTTATTTTATCTCTAGAGCAGCACGAATCTCTGGTAGCAAATCGAATGGCATGGAAGAATTTGATGCCACCTCAACTGAAAACAGGGGAAAGATATCTTCTTTCTTAAATAAAAGTAAAAGTTGGTTTCTATCACACTCGGAATATTTGAACTTCTTTACAATCTTAGTGCTTGCTTCGGTGCCAAATCCCCTATTTGATTTAGCTGGCATCATGTGTGGACAATTCGGCATTCCATTTTGGAAGTTTTTTCTTGCAACATTGATTGGAAAAGCAATCATCAAAACTCATATACAGACAGTTTTCATAATCCTAGTTTGCAATAATCAACTTCTTGACTGGATCGAAAATGAGTTAGTTCGGATGCTCGGTCTTGTTCCGGGTTTTGCATCTATCTTGCCCAACATCATTGCCAAACTTAAAGCAGTAAAATATAAGTACCAGAAAGCACCTTCTACGAGTTCAAGTTACGATAAGGGCAAAAAGTGGGGTATGTCATTTGCGTCGATCTGGAACACAGTAGTATGGCTCATGATCATTAATTTATCTAGCCACATAGTCACCGATACTGCCCAGAAATATATGAAGAAACAGCAGGAAAAGGAGCTTGCTGCTTTGACAAACAACGACAAGGAAAACTAA 1281 39.97 MGSSRRNTSSSSSLSQPTDLSISGLSKKHQHDLQNLTLTTQPFKTFKFFVLGVLQYIRQSILYLWAKGGWLLLLNTIVAAIGALLLTTEGPHVKHVKEIFKYVEFGLWWVVLGVASSIGLGSGLHTFVLYLGPHIAFFTLKAVQCGRVDLKTATYDTIQLKRGPSWLDKNCSDFWPPLNISLHNSWVPLSSILPMVQIEAILWGIGTALGELPPYFISRAARISGSKSNGMEEFDATSTENRGKISSFLNKSKSWFLSHSEYLNFFTILVLASVPNPLFDLAGIMCGQFGIPFWKFFLATLIGKAIIKTHIQTVFIILVCNNQLLDWIENELVRMLGLVPGFASILPNIIAKLKAVKYKYQKAPSTSSSYDKGKKWGMSFASIWNTVVWLMIINLSSHIVTDTAQKYMKKQQEKELAALTNNDKEN 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1062585 1064967 - Conep04aG0024200.1 Cone4ag0233 435211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0233 426 PANTHER MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED 47 414 IPR050577 GO:0005783(PANTHER)|GO:0012505(PANTHER)|GO:0016020(PANTHER)
Cone4ag0233 426 MobiDBLite consensus disorder prediction 1 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0233 K21248 - - csv:101215273 610.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0843 Cone-Chr14:5283459 Cone4ag0233 Cone-Chr4:1062585 1.70E-202 wgd
Cone15ag0830 Cone-Chr15:5973791 Cone4ag0233 Cone-Chr4:1062585 2.01E-194 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g475 Blo01g00127 Blo12g00325 Bda03g00892 Bda08g00234 Bpe04g00836 Bpe14g01180 Bma04g00790 Bma05g01111 Cmo08g01125 Cmo17g00230 . . . . . . . . . . . . . . Cla06g00573 Cam06g0612 Cec06g0613 Cco06g0619 Clacu06g0599 Cmu06g0592 Cre06g1359 Cone14ag0843 Cone15ag0830 . Cone4ag0233 . . . . Blo02g00547 . . Bda13g00132 Bpe05g00905 . Bma02g00856 . Sed09g0767 . . Cma08g01148 Cma17g00244 Car08g01030 Car17g00219 Cpe12g00203 Cpe17g00143 Bhi12g01722 Tan06g2530 Cmetu05g1070 Lac12g2295 Hepe03g0188 . Lcy13g0271 . . . . . . . Lsi09g01330 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003598 4 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 3 1 47