Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0242 ATGTTGAAGGTTGATCCTACAGGGAGATATGGAAGATACAATGAAATTCTGGGAAAAAGGAGCTTCAAAGTTAATGTATGTACGAAGCTCGGGTATAGAGGGTTTGATGAGTATGAAGGGATAGAAGTGGCATGGAATCAGGTGAAGCTGAATGACTTTCTTCGAACACCTGAAGATCTACAGAGACTTTACTCTGAAATTCATCTGCTCAAAACATCGAAACATAACAACATCATGAAGCTCTATGCTTCTTGGGTTGACATTTCTAACAGGAACATCAACTTCATTACAGAGATGTTCAACTCTGGCTCTCTCAGACAGTATAGGTTAAGACGCAAGAGAGTTAACATCAGAGCTGTGAAGCATTGCTGCAGGCAGATTCTGAGAGGGCTTCTTTATCCTCATAGCCGTGATCCCCCTGTTATTCACAGAGACCATAAATGTGACAATATTTTTGTGAATGGAAACCAGGGAGAAGTGAAAATCGGTGATCTCGGCCTCGCTGCAATTCTTCACTCAGGAACACCTGAATTTATGGCCCCGGAAATTTATGAAGAGGAATATGATGAGTTGGGAAAAAAACCAGAAGCTCTCTACAAAGTTGAAGATCCGGAAGTTCGTCAATTTGTCGAGAAATGCTTAGCGACTATGTCGCATAGGCTCCCGGCTAGTGAACTACTACAAGACCCATTTCTCCAAGTTGACTATTATGGATCCTTTCTAAGGCCAATAAATTACAAACCCGAAACAGAAGCAAGTGAATTCAATCTCCTCTCCTGTCAAGGGGATGAGCATTTCACAGACGTTGACATTTCAATCAAAGGCAAGAGAGGTGAATCAGATGGTATATTCTTTAGGCTCAGAATTGCTGATCAAGAAGAGATAGATACTGCATTGAGTGTTGCAAATGAAATGGTTTCCGAGCTTGACATTACTGATCAAGAAGTGACAAAAATAGCGGATATTATAGACAGTGAAATCGTGCGAGAATGGAAGAGTCAAATAGGTGTGGAGGAAGGCCCACATCGTGCTGATTCAAGTTTCTGTCGCAAGTGTGCTTCTTATAGATCGTCACCTGAATGTGTTTCGCCCCAATGA 1098 41.71 MLKVDPTGRYGRYNEILGKRSFKVNVCTKLGYRGFDEYEGIEVAWNQVKLNDFLRTPEDLQRLYSEIHLLKTSKHNNIMKLYASWVDISNRNINFITEMFNSGSLRQYRLRRKRVNIRAVKHCCRQILRGLLYPHSRDPPVIHRDHKCDNIFVNGNQGEVKIGDLGLAAILHSGTPEFMAPEIYEEEYDELGKKPEALYKVEDPEVRQFVEKCLATMSHRLPASELLQDPFLQVDYYGSFLRPINYKPETEASEFNLLSCQGDEHFTDVDISIKGKRGESDGIFFRLRIADQEEIDTALSVANEMVSELDITDQEVTKIADIIDSEIVREWKSQIGVEEGPHRADSSFCRKCASYRSSPECVSPQ 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1093750 1095435 + Conep04aG0025100.1 Cone4ag0242 435220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0242 365 ProSiteProfiles Protein kinase domain profile. 1 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0242 365 Gene3D Transferase(Phosphotransferase) domain 1 99 192 - -
Cone4ag0242 365 FunFam Probable serine/threonine-protein kinase WNK1 1 98 - -
Cone4ag0242 365 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 191 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cone4ag0242 365 Pfam Protein kinase domain 36 185 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0242 365 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Cone4ag0242 365 SUPERFAMILY Protein kinase-like (PK-like) 32 248 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0242 Cone-Chr4:1093750 Cone5ag0535 Cone-Chr5:2272794 3.69E-146 dispersed
Cone10ag0695 Cone-Chr10:3509380 Cone4ag0242 Cone-Chr4:1093750 2.94E-119 wgd
Cone4ag0242 Cone-Chr4:1093750 Cone7ag0248 Cone-Chr7:1045463 1.07E-206 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82726 PF13920 zf-C3HC4_3 1.20E-11 CL0229 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0242 K08867 - cit:102626943 475.322