Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0258 ATGTCATCTCATCTTCATCGTTGTCTTATAATCTCAGCTACGACAACCTCCATTACACCCGCTTACCAAAATGATTCGAAATCCATTTCCAAGGATCATTCTCGAATTGGGTCGTTCAAAATTTGCAAAACCATGAAAGAAGTCAAGCAATTACACTGTCTCGTAACAAAGCAGGGTTCTAGCCATAGACTATCTACTGTGACCAAGCTGATTGCCGCTTGTACAGAAATGAGCACCTTTGAAAGCTTGGACCATGCTCGAAAGGCCTTCGAGCTTTTCCGGGAAGGCGGCGACAAAGCAAATGTCACCTTGTTCATGTACAATTCCATAATCAGAGGTTACTCTTCTTCTGGGCTTATTGACGAAGCTCTTTCTCTTTATAGTCAGATGGTGGCTTCTGGCATTTTGCCCGATAACTTCACTTTTCCTTTCGTCTTGAGCGCGTGTGCTAAGGGCGTGGCGCTTCATGAAGGTGTTCAGCTACATGCGGAAATTTTCAAGATGGGATTAGACGACGATGTTTTTATTGGAAATTCGTTGGTTCATTTCTATGCGCAGTGTGGAGAGATCAGTTTTGCACGCAAGGTATTTGATGATATGTCTGAGAGAAATGTCGTGTCGTGGACTAGTTTGATTTGCGGGTATGCTAGAACAGAGAGGCCCAAAGAGGCTGTTTCCTTGTTTTTTGAAATGGTTGAGACTGGAATCAGACCCAACTCTGTTACAATGGTGTGTGTGATTTCAGCTTGTGCAAAGTTGAAGGATCTTGAATTGGGTGAGAGGGTATTTGCTTATATTAACGAGTCAGGAGTGATGCTTAATACCCATATGGTCAATGCGCTTGTCGATATGTATATGAAATGTGGAGCAATTGCTTCTGCAAAGCGACTTTTCGATGAATCTATAGAACGGAATCTTGTTCTTTGCAACACTATTATGTCAAATTATGTACGCCATGGGATGCCAAAAGAAGCGCTTATTCTCTTTATCGAAATGCTGCAGCTTGGTCCACAACCAGATAGAGTTTCATTGCTCTCTGCAATATCAGCTTGTGCACAAACGAGTGAAATTAATTTCGGGAAGAGCTGCCATGCTTATGCTTTAAGAAATGAATTGGAAAGTTGGGATAACATTTGTAATGCCATGATAGACATGTACATGAAGTGTGGAAAACAAGATATGGCCTTCCGGGTTTTCAATGGTATGTCTAATAAGACCATAATTTCATGGAATTCATTAATTGCAGGATTTATTAGAAGTGGTGATTTAGACTCTGCTTGGGGGATATTCAATGAGATGCCATTTAGTGACCTGGTGTCTTGGAACACTATGATTAGTGCATTGGTGCAAGAGAGCATGTTTAAAGAAGCGATTAAGTTTTTCCGAGTGATGCAGAATAAGGGAATAAAAGCGGATAGGGTAACAATGGTGGAAATCGCATCTGCTTGTGGATATCTTGGAGCTTTGGATCTTTCCAAGTGGATCTATGCTTACATTAGAAAGAACACAATTGAGGTTGATATGCTTCTTGGGACTGCTATAGTTGATATGTTTGCTAGGTGTGGTGATCCTCATTCTGCATTGAAAGTGTTTAACTATATGGAAAGAAGAGATGTTTCTGCTTGGACAGCAGCCATTGGAGCAATGGCTATGGAAGGAAATGGCAAACAAGCTATAGCTCTTTTTAAAGAAATGACCCTGCAAGGAGTGAAACCAGATGGTGTAGCTTTTGCAAATGTACTTACAGCTTGTAGCCATGGAGGGTTTGTGGAAGAAGGGAAACAGCTATTTAGGTCAATGGAGAGTCATAAAGTCCGTCCACAAGTTATCCATTATGGGTGTCTAGTGGATCTATTAGGCCGTGCTGATTTGCTAGAAGAAGCTCTAGATATAATAAAGAGCATGCCAATGAAGCCTAATGAAGTGATATGGGGATCGCTTTTGGCCGCTTGCCGGACCCGCAAAAATCTCGAGATGGCAAATTACGCTGCTGAAAAGTTAGCTGAATTGGGGCCGGAGAGGACAGGAATCCGTGTTCTTTTATCAAACATATATGCATCTGCTGGGAAATGGGAAGATGTAGCAAAAGTGAGGCTAGAATTGAAGAAGAAAGGCGTCCAGAAAATGCCTGGATCAAGCTTGATCGTGGTTAATGGAATTATCCACGAATTTACCTCAGGCGATGAATCACACCCGGAAAAGGACCATATTGGAATGATGCTCCAAGAAATGAACTGGAAACTGAAGGATGAAGGCTATGTACCTGATTTAACCAATGTTTTGGTTGATGTAAATGAGAATGAGAAGAAGTATTTGCTAAGTCGACATAGTGAGAAGATGGCCATAGCTTATGGGCTTATTAGTACCGATAAATTTGTAGAGATTCGTGTTGTCAAGAATTTACGAATGTGCTCTGACTGCCATATGTTTGCTAAATTGATTTCGAAAGTATATGAACGGGAGATTGTTGTAAGAGATAATAACAGGTTTCACTTCTTCCGGGAAGGATCTTGTTCGTGTTGTGATTATTGGTAA 2535 41.18 MSSHLHRCLIISATTTSITPAYQNDSKSISKDHSRIGSFKICKTMKEVKQLHCLVTKQGSSHRLSTVTKLIAACTEMSTFESLDHARKAFELFREGGDKANVTLFMYNSIIRGYSSSGLIDEALSLYSQMVASGILPDNFTFPFVLSACAKGVALHEGVQLHAEIFKMGLDDDVFIGNSLVHFYAQCGEISFARKVFDDMSERNVVSWTSLICGYARTERPKEAVSLFFEMVETGIRPNSVTMVCVISACAKLKDLELGERVFAYINESGVMLNTHMVNALVDMYMKCGAIASAKRLFDESIERNLVLCNTIMSNYVRHGMPKEALILFIEMLQLGPQPDRVSLLSAISACAQTSEINFGKSCHAYALRNELESWDNICNAMIDMYMKCGKQDMAFRVFNGMSNKTIISWNSLIAGFIRSGDLDSAWGIFNEMPFSDLVSWNTMISALVQESMFKEAIKFFRVMQNKGIKADRVTMVEIASACGYLGALDLSKWIYAYIRKNTIEVDMLLGTAIVDMFARCGDPHSALKVFNYMERRDVSAWTAAIGAMAMEGNGKQAIALFKEMTLQGVKPDGVAFANVLTACSHGGFVEEGKQLFRSMESHKVRPQVIHYGCLVDLLGRADLLEEALDIIKSMPMKPNEVIWGSLLAACRTRKNLEMANYAAEKLAELGPERTGIRVLLSNIYASAGKWEDVAKVRLELKKKGVQKMPGSSLIVVNGIIHEFTSGDESHPEKDHIGMMLQEMNWKLKDEGYVPDLTNVLVDVNENEKKYLLSRHSEKMAIAYGLISTDKFVEIRVVKNLRMCSDCHMFAKLISKVYEREIVVRDNNRFHFFREGSCSCCDYW 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1156029 1158563 - Conep04aG0026700.1 Cone4ag0258 435236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0258 844 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Cone4ag0258 844 Gene3D Tetratricopeptide repeat domain 155 253 IPR011990 GO:0005515(InterPro)
Cone4ag0258 844 Gene3D Tetratricopeptide repeat domain 254 363 IPR011990 GO:0005515(InterPro)
Cone4ag0258 844 FunFam Pentatricopeptide repeat-containing protein At3g22690 369 491 - -
Cone4ag0258 844 FunFam Pentatricopeptide (PPR) repeat-containing protein 601 763 - -
Cone4ag0258 844 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Cone4ag0258 844 Pfam E motif 656 715 IPR046848 -
Cone4ag0258 844 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 419 719 IPR050421 GO:0009507(PANTHER)
Cone4ag0258 844 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 436 IPR002885 -
Cone4ag0258 844 Pfam Pentatricopeptide repeat domain 561 620 IPR002885 -
Cone4ag0258 844 Gene3D Tetratricopeptide repeat domain 364 515 IPR011990 GO:0005515(InterPro)
Cone4ag0258 844 Gene3D Tetratricopeptide repeat domain 516 751 IPR011990 GO:0005515(InterPro)
Cone4ag0258 844 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 572 IPR002885 -
Cone4ag0258 844 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Cone4ag0258 844 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Cone4ag0258 844 Pfam DYW family of nucleic acid deaminases 752 844 IPR032867 GO:0008270(InterPro)
Cone4ag0258 844 FunFam Pentatricopeptide repeat-containing protein At5g39350 family 261 368 - -
Cone4ag0258 844 Pfam PPR repeat 379 404 IPR002885 -
Cone4ag0258 844 Pfam PPR repeat 512 538 IPR002885 -
Cone4ag0258 844 Pfam PPR repeat 408 434 IPR002885 -
Cone4ag0258 844 Gene3D Tetratricopeptide repeat domain 13 154 IPR011990 GO:0005515(InterPro)
Cone4ag0258 844 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Cone4ag0258 844 FunFam Pentatricopeptide repeat-containing protein mitochondrial 492 600 - -
Cone4ag0258 844 Pfam PPR repeat family 305 352 IPR002885 -
Cone4ag0258 844 Pfam PPR repeat family 105 151 IPR002885 -
Cone4ag0258 844 Pfam PPR repeat family 437 476 IPR002885 -
Cone4ag0258 844 Pfam PPR repeat family 203 252 IPR002885 -
Cone4ag0258 844 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 104 260 - -
Cone4ag0258 844 NCBIfam pentatricopeptide repeat 106 138 IPR002885 -
Cone4ag0258 844 NCBIfam pentatricopeptide repeat 408 437 IPR002885 -
Cone4ag0258 844 NCBIfam pentatricopeptide repeat 178 206 IPR002885 -
Cone4ag0258 844 NCBIfam pentatricopeptide repeat 541 573 IPR002885 -
Cone4ag0258 844 NCBIfam pentatricopeptide repeat 439 472 IPR002885 -
Cone4ag0258 844 NCBIfam pentatricopeptide repeat 206 239 IPR002885 -
Cone4ag0258 844 NCBIfam pentatricopeptide repeat 307 340 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0258 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0258 Cone-Chr4:1156029 Cone7ag0462 Cone-Chr7:2098988 1.93E-168 dispersed
Cone7ag1309 Cone-Chr7:9615654 Cone4ag0258 Cone-Chr4:1156029 1.19E-53 dispersed
Cone7ag1310 Cone-Chr7:9616889 Cone4ag0258 Cone-Chr4:1156029 5.78E-41 dispersed
Cone9ag1377 Cone-Chr9:10312242 Cone4ag0258 Cone-Chr4:1156029 1.44E-48 dispersed
Cone4ag0258 Cone-Chr4:1156029 Cone5ag0556 Cone-Chr5:2379442 1.48E-188 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g536 . . . . . . . . . . Cma06g01391 . Car06g01200 . . . . Bhi01g00780 . . . . . . . . . . . . . . . . Cone4ag0258 . . . Cme06g00589 . . . . . Bpe13g00595 . . . Cmo06g01396 . . . . . . . . . . . . . . Cla05g00520 . . . . . . . . Chy06g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013750 0 1 0 0 1 1 2 0 1 1 1 1 1 1 0 1 1 1 0 1 0 0 1 1 1 0 1 1 1 1 22