Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0260 ATGTCGTCTGGCGCTAGGACACCTCAGGAGATGGAGATGGAGATGGAGGTTCAGGAAGAAAGTAAGATACGGAATTTGAAGGGGGTGGCAAGTTTTAATGGCAGAGATAAGATTTTCCGAGCAGATAAGATTGATTTGAAAACCTTGGATATGCAATTGGAGAAGCACTTGAGCCGTGTTTGGTCGAGGAACTCAGAGATTGAGAGGCCGAAGGAAGAATGGGAGATTGATTTGTCTTTGCTTGATATTAAATACGTTTTAGCTCACGGCACGTATGGAACTGTCTACAAGGGTACTTATGATAGCCAAGATGTTGCAGTGAAGCTGTTGGATTGGGGGGAGGATGGGGTTGCTTCAGCTTCTGAAACTTCTGCTTTGAGGGCATCATTTAAGCAAGAAGTTGCTGTTTGGCACAAGCTCTATCACCCTAACGTCACAAAATTTGTGGGAGCTTCAATGGGAACTGTAAACCTAAAGATTCCTTCCAAAAGCTCTTCTTCAAGTGATGGCAATAATTCCTTACCTCCAAGGGCGTGCTGTGTCGTCGTGGAGTATCTCCCTGGCGGAACATTAAAACAATACTTGATTAGAAACAGGCAAAAGAAACTTGCGTTTAAGGTTGTCATCCAACTTGCATTGGATCTTTCCAGAGGACTTAGCTATCTTCATTCACAGAAGATTGTCCATCGTGATGTGAAAACAGAAAATATGCTGTTAGATGGTCAGAGAACCCTAAAAATTGCTGATTTTGGAGTGGCTCGAGTTGAGGCTCAAAATCCGAGAGACATGACTGGTGAAACTGGAACTCTTGGATACATGGCTCCAGAGGTTCTTGATGGCAAACCTTACAATAGAAGATGCGATGTTTATAGCTTTGGAATCTGCTTGTGGGAAATCTACTGCTGTGATATGCCTCACCCAGATCTTAGCTTTGTTGATGTCTCATCTGCAGTTGTCAAGCAGAACCTGCGACCTGAGATTCCAAGATGCTGCCCGAGTTCCTTGGCGAGCATTATGCGGAAATGTTGGGATTCAAATGCAGATAAGCGGCCGGAAATGGATGAAGTGGTGAAAATGTTGGAAGCAATCGACACAAGCAAAGGAGGAGGGATGATTCCAGAAGACCAGCAGACCAGTTGTTTATGCTTTGCCCCCGCCCGTGGACCATAA 1170 44.7 MSSGARTPQEMEMEMEVQEESKIRNLKGVASFNGRDKIFRADKIDLKTLDMQLEKHLSRVWSRNSEIERPKEEWEIDLSLLDIKYVLAHGTYGTVYKGTYDSQDVAVKLLDWGEDGVASASETSALRASFKQEVAVWHKLYHPNVTKFVGASMGTVNLKIPSKSSSSSDGNNSLPPRACCVVVEYLPGGTLKQYLIRNRQKKLAFKVVIQLALDLSRGLSYLHSQKIVHRDVKTENMLLDGQRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPHPDLSFVDVSSAVVKQNLRPEIPRCCPSSLASIMRKCWDSNADKRPEMDEVVKMLEAIDTSKGGGMIPEDQQTSCLCFAPARGP 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1162492 1164280 - Conep04aG0026900.1 Cone4ag0260 435238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0260 389 SMART serkin_6 81 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0260 389 SUPERFAMILY Protein kinase-like (PK-like) 61 360 IPR011009 -
Cone4ag0260 389 ProSiteProfiles Protein kinase domain profile. 81 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0260 389 FunFam Kinase suppressor of Ras 1 70 164 - -
Cone4ag0260 389 CDD STKc_MAP3K-like 87 360 - -
Cone4ag0260 389 FunFam Serine/threonine-protein kinase HT1 186 371 - -
Cone4ag0260 389 Gene3D Phosphorylase Kinase; domain 1 70 162 - -
Cone4ag0260 389 Gene3D Transferase(Phosphotransferase) domain 1 186 379 - -
Cone4ag0260 389 Pfam Protein tyrosine and serine/threonine kinase 83 360 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0260 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0260 389 PRINTS Tyrosine kinase catalytic domain signature 183 196 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0260 389 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0260 389 PRINTS Tyrosine kinase catalytic domain signature 221 239 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0260 389 PRINTS Tyrosine kinase catalytic domain signature 331 353 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0260 389 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 361 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0260 Cone-Chr4:1162492 Cone6ag1010 Cone-Chr6:5633418 6.14E-62 dispersed
Cone17ag0566 Cone-Chr17:2904712 Cone4ag0260 Cone-Chr4:1162492 3.33E-160 wgd
Cone20ag0852 Cone-Chr20:6216207 Cone4ag0260 Cone-Chr4:1162492 6.88E-107 wgd
Cone4ag0260 Cone-Chr4:1162492 Cone7ag0269 Cone-Chr7:1118657 5.71E-259 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82727 PF09335 SNARE_assoc 2.20E-23 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0260 - - - 0.0