Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0261 ATGGACACGCCGGAGAGGAATCAGATCGGAACTGCATCCATTTCCAAATTCGAGGACTCCCCTGTCTTCAACTATATCAACAGTCTTTCCCCTATCGAGCCCGTTAAATCCATGCACATTACTCAGACATTCAACTCGCTTAATTTCGCAGCTTTACCTTCGGTTTTCACTTCTCCGCATGTCGCTTCTCACAAGGAATCTAGATTCTTAACAAGGAATAGCGACCCAAATCTATCGAAATCCGAGTCTTCTTCTGAAAATGGGAATAATGTTTATACAAATGAAGGGGCTGTTACGGATATGGCTGAACCAAATAATAACATGGTTGTACCACATGAAGACTTATCTCCTGTTCCTTCCAATAATGAATCGTTGAAATCTACAATGGAGGAGAATGATATATTGAAATATGTTTCTGATAGCCCAGACTGCAACCTGGCACAACATTGTGGAAATCAAACTGATCGTGAATTAGAATTAGGAGATAATTCTGCTGTAGTTGTCTCCTTTATCAAAGATACCACTACACACGATTCGTCTGAAGCTGGAACAAATTTTCTGGGGATTAGTCAAGGCGAACAAAGAAAGGAGGGGATGGGATATGCGTGGGACAATCTGATTTCTGATAGTGCTGACCTGTTTATTTTCAACTCTCCAAATAGCTCAGAGGCTATTAGATTGATTCACAAACCACTAAACACCATAATGGAACGTCCTACAAGTCCTGTTTTGCAGTTTCTGCAAAACGAAAATACTGATATTCACAACCTGCAAATTGTTAATTCATTCAATTCTGGTCAAGCAAGTGAAAGAGAAGACCCTTCCACTCAACCCGAAGAAGCTTGTGATCTGAAAGAAATAGACCAAACACTCAGCAACAACCTTGCATATAGAAATTTTGACAAGAGCAATGTTGTGGAGAAAATGCCTGTCTCGAATTTACATCGTGGTATAAGGAGACGCTGTCTTGATTTTGAGACCGCAGGATCTCGAAGAAAGAATTTAGGCGAAGATTCAGATAACGGTTTGATGTTATTACCTCCTAATGAAAAGCAAATGATTGCTCCAAAACCTAATTGTGATTCATCTCGAATCACATTACCCGGAATAGGGTTACACTTAAATGCTCTTGCCACAACTTCCGGAAGCCGAGTAACTTTACCAACCTCCAATGTATCAACAAGTTCCACTTCAACTGGTCAAGATCTAATTTTGTACTCGGCCTCTGCTGATAAAGATATAGATTCCTCTGAAAATGGGGTTCAACAAGAGGAAGAGTTCAATCAGAATAGCCCCAAAAAGAAGAAGCGTAAATCGGATCATTCTGAAGAAGGTGAGTCATGCAAACGATGCAACTGTAAAAAGTCAAAGTGTTTGAAACTTTATTGTGAATGTTTTGCTGCTGGAGTCTACTGCATTGAGCCATGTTCATGTCAAGATTGCTTCAACAAACCGATACATGAAGAAACTGTTCTTGCAACTCGTAAACAGATCGAATCGCGCAATCCTCTTGCATTTGCTCCTAAAGTGATTAGGAATTCTAGTTATATTCCTGAAACTGGGGATGAGCCAAGCAAAACACCAGCTTCAGCACGACATAAAAGAGGTTGCAACTGCAAGAAATCAAATTGTCTGAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGGTGTTCTGTTAATTGCCGATGTGAAGGTTGTAAAAATGCATTCGGCAGAAAAGACGGATCTGCTCAGATCGCAATAGAAACTGAACTAGAAGATGAAGAAGAAGAGGATGGACACGAAAACAGTGTACTACAAGAACCAGAAATCCAGAGTAATGAAGAAAAGAACACAATTCCGGCAACCCCATTACAGCTTAGCAGAAGCTCGAGAAGTCTACTTTTCTTGGGCCTCTACCCAAGTTTGAGAAATGCATGCAAACCGTTGTAG 1935 40.47 MDTPERNQIGTASISKFEDSPVFNYINSLSPIEPVKSMHITQTFNSLNFAALPSVFTSPHVASHKESRFLTRNSDPNLSKSESSSENGNNVYTNEGAVTDMAEPNNNMVVPHEDLSPVPSNNESLKSTMEENDILKYVSDSPDCNLAQHCGNQTDRELELGDNSAVVVSFIKDTTTHDSSEAGTNFLGISQGEQRKEGMGYAWDNLISDSADLFIFNSPNSSEAIRLIHKPLNTIMERPTSPVLQFLQNENTDIHNLQIVNSFNSGQASEREDPSTQPEEACDLKEIDQTLSNNLAYRNFDKSNVVEKMPVSNLHRGIRRRCLDFETAGSRRKNLGEDSDNGLMLLPPNEKQMIAPKPNCDSSRITLPGIGLHLNALATTSGSRVTLPTSNVSTSSTSTGQDLILYSASADKDIDSSENGVQQEEEFNQNSPKKKKRKSDHSEEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEETVLATRKQIESRNPLAFAPKVIRNSSYIPETGDEPSKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSVNCRCEGCKNAFGRKDGSAQIAIETELEDEEEEDGHENSVLQEPEIQSNEEKNTIPATPLQLSRSSRSLLFLGLYPSLRNACKPL 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1167255 1171027 + Conep04aG0027000.1 Cone4ag0261 435239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0261 644 ProSiteProfiles CRC domain profile. 447 572 IPR005172 -
Cone4ag0261 644 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 631 IPR044522 GO:0003700(InterPro)
Cone4ag0261 644 SMART CXC_2 446 487 IPR033467 -
Cone4ag0261 644 SMART CXC_2 532 573 IPR033467 -
Cone4ag0261 644 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 449 484 IPR005172 -
Cone4ag0261 644 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 534 570 IPR005172 -
Cone4ag0261 644 MobiDBLite consensus disorder prediction 66 93 - -
Cone4ag0261 644 MobiDBLite consensus disorder prediction 585 618 - -
Cone4ag0261 644 MobiDBLite consensus disorder prediction 414 447 - -
Cone4ag0261 644 MobiDBLite consensus disorder prediction 72 93 - -
Cone4ag0261 644 MobiDBLite consensus disorder prediction 600 618 - -
Cone4ag0261 644 MobiDBLite consensus disorder prediction 428 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0663 Cone-Chr20:4043960 Cone4ag0261 Cone-Chr4:1167255 1.16E-59 dispersed
Cone4ag0261 Cone-Chr4:1167255 Cone7ag0677 Cone-Chr7:3722160 5.41E-32 dispersed
Cone10ag0689 Cone-Chr10:3357475 Cone4ag0261 Cone-Chr4:1167255 4.68E-103 wgd
Cone14ag0864 Cone-Chr14:5496304 Cone4ag0261 Cone-Chr4:1167255 2.34E-176 wgd
Cone4ag0261 Cone-Chr4:1167255 Cone7ag0270 Cone-Chr7:1123293 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45905 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0261 - - - 0.0