Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0261 ATGGACACGCCGGAGAGGAATCAGATCGGAACTGCATCCATTTCCAAATTCGAGGACTCCCCTGTCTTCAACTATATCAACAGTCTTTCCCCTATCGAGCCCGTTAAATCCATGCACATTACTCAGACATTCAACTCGCTTAATTTCGCAGCTTTACCTTCGGTTTTCACTTCTCCGCATGTCGCTTCTCACAAGGAATCTAGATTCTTAACAAGGAATAGCGACCCAAATCTATCGAAATCCGAGTCTTCTTCTGAAAATGGGAATAATGTTTATACAAATGAAGGGGCTGTTACGGATATGGCTGAACCAAATAATAACATGGTTGTACCACATGAAGACTTATCTCCTGTTCCTTCCAATAATGAATCGTTGAAATCTACAATGGAGGAGAATGATATATTGAAATATGTTTCTGATAGCCCAGACTGCAACCTGGCACAACATTGTGGAAATCAAACTGATCGTGAATTAGAATTAGGAGATAATTCTGCTGTAGTTGTCTCCTTTATCAAAGATACCACTACACACGATTCGTCTGAAGCTGGAACAAATTTTCTGGGGATTAGTCAAGGCGAACAAAGAAAGGAGGGGATGGGATATGCGTGGGACAATCTGATTTCTGATAGTGCTGACCTGTTTATTTTCAACTCTCCAAATAGCTCAGAGGCTATTAGATTGATTCACAAACCACTAAACACCATAATGGAACGTCCTACAAGTCCTGTTTTGCAGTTTCTGCAAAACGAAAATACTGATATTCACAACCTGCAAATTGTTAATTCATTCAATTCTGGTCAAGCAAGTGAAAGAGAAGACCCTTCCACTCAACCCGAAGAAGCTTGTGATCTGAAAGAAATAGACCAAACACTCAGCAACAACCTTGCATATAGAAATTTTGACAAGAGCAATGTTGTGGAGAAAATGCCTGTCTCGAATTTACATCGTGGTATAAGGAGACGCTGTCTTGATTTTGAGACCGCAGGATCTCGAAGAAAGAATTTAGGCGAAGATTCAGATAACGGTTTGATGTTATTACCTCCTAATGAAAAGCAAATGATTGCTCCAAAACCTAATTGTGATTCATCTCGAATCACATTACCCGGAATAGGGTTACACTTAAATGCTCTTGCCACAACTTCCGGAAGCCGAGTAACTTTACCAACCTCCAATGTATCAACAAGTTCCACTTCAACTGGTCAAGATCTAATTTTGTACTCGGCCTCTGCTGATAAAGATATAGATTCCTCTGAAAATGGGGTTCAACAAGAGGAAGAGTTCAATCAGAATAGCCCCAAAAAGAAGAAGCGTAAATCGGATCATTCTGAAGAAGGTGAGTCATGCAAACGATGCAACTGTAAAAAGTCAAAGTGTTTGAAACTTTATTGTGAATGTTTTGCTGCTGGAGTCTACTGCATTGAGCCATGTTCATGTCAAGATTGCTTCAACAAACCGATACATGAAGAAACTGTTCTTGCAACTCGTAAACAGATCGAATCGCGCAATCCTCTTGCATTTGCTCCTAAAGTGATTAGGAATTCTAGTTATATTCCTGAAACTGGGGATGAGCCAAGCAAAACACCAGCTTCAGCACGACATAAAAGAGGTTGCAACTGCAAGAAATCAAATTGTCTGAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGGTGTTCTGTTAATTGCCGATGTGAAGGTTGTAAAAATGCATTCGGCAGAAAAGACGGATCTGCTCAGATCGCAATAGAAACTGAACTAGAAGATGAAGAAGAAGAGGATGGACACGAAAACAGTGTACTACAAGAACCAGAAATCCAGAGTAATGAAGAAAAGAACACAATTCCGGCAACCCCATTACAGCTTAGCAGAAGCTCGAGAAGTCTACTTTTCTTGGGCCTCTACCCAAGTTTGAGAAATGCATGCAAACCGTTGTAG 1935 40.47 MDTPERNQIGTASISKFEDSPVFNYINSLSPIEPVKSMHITQTFNSLNFAALPSVFTSPHVASHKESRFLTRNSDPNLSKSESSSENGNNVYTNEGAVTDMAEPNNNMVVPHEDLSPVPSNNESLKSTMEENDILKYVSDSPDCNLAQHCGNQTDRELELGDNSAVVVSFIKDTTTHDSSEAGTNFLGISQGEQRKEGMGYAWDNLISDSADLFIFNSPNSSEAIRLIHKPLNTIMERPTSPVLQFLQNENTDIHNLQIVNSFNSGQASEREDPSTQPEEACDLKEIDQTLSNNLAYRNFDKSNVVEKMPVSNLHRGIRRRCLDFETAGSRRKNLGEDSDNGLMLLPPNEKQMIAPKPNCDSSRITLPGIGLHLNALATTSGSRVTLPTSNVSTSSTSTGQDLILYSASADKDIDSSENGVQQEEEFNQNSPKKKKRKSDHSEEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEETVLATRKQIESRNPLAFAPKVIRNSSYIPETGDEPSKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSVNCRCEGCKNAFGRKDGSAQIAIETELEDEEEEDGHENSVLQEPEIQSNEEKNTIPATPLQLSRSSRSLLFLGLYPSLRNACKPL 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1167255 1171027 + Conep04aG0027000.1 Cone4ag0261 435239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0261 644 ProSiteProfiles CRC domain profile. 447 572 IPR005172 -
Cone4ag0261 644 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 631 IPR044522 GO:0003700(InterPro)
Cone4ag0261 644 SMART CXC_2 446 487 IPR033467 -
Cone4ag0261 644 SMART CXC_2 532 573 IPR033467 -
Cone4ag0261 644 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 449 484 IPR005172 -
Cone4ag0261 644 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 534 570 IPR005172 -
Cone4ag0261 644 MobiDBLite consensus disorder prediction 66 93 - -
Cone4ag0261 644 MobiDBLite consensus disorder prediction 585 618 - -
Cone4ag0261 644 MobiDBLite consensus disorder prediction 414 447 - -
Cone4ag0261 644 MobiDBLite consensus disorder prediction 72 93 - -
Cone4ag0261 644 MobiDBLite consensus disorder prediction 600 618 - -
Cone4ag0261 644 MobiDBLite consensus disorder prediction 428 447 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0261 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0663 Cone-Chr20:4043960 Cone4ag0261 Cone-Chr4:1167255 1.16E-59 dispersed
Cone4ag0261 Cone-Chr4:1167255 Cone7ag0677 Cone-Chr7:3722160 5.41E-32 dispersed
Cone10ag0689 Cone-Chr10:3357475 Cone4ag0261 Cone-Chr4:1167255 4.68E-103 wgd
Cone14ag0864 Cone-Chr14:5496304 Cone4ag0261 Cone-Chr4:1167255 2.34E-176 wgd
Cone4ag0261 Cone-Chr4:1167255 Cone7ag0270 Cone-Chr7:1123293 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g539 . Blo12g00335 Bda03g00875 . . Bpe14g01204 Bma04g00774 . . . Cma06g01388 Cma14g01734 Car06g01197 Car14g01564 Sed02g1334 Cpe08g00275 Cpe03g01455 Bhi01g00774 Tan10g0801 Cmetu07g2311 . Hepe05g1577 . Lcy11g1571 . . . . . . . . Cone15ag0860 Cone7ag0270 Cone4ag0261 Lsi05g01627 . . Cme06g00586 Blo02g00527 Blo07g00229 Bda11g00591 Bda13g00106 . Bpe13g00593 . Bma06g01566 . Cmo06g01394 Cmo14g01773 . . . . . Cpe17g00155 . . . . . . . Cla05g00518 Cam05g0569 Cec05g0581 Cco05g0579 Clacu05g0566 Cmu05g0537 Cre05g0606 . Csa03g01301 Chy06g00555 Cme05g00473
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0261 . 311 577 CPP Transcription Factor Family AT3G22760 56.1 3.5e-82 303.1
Cone20ag0663 . 489 635 CPP Transcription Factor Family AT3G22760 58.6 8.3e-47 185.7
Cone17ag1032 . 511 652 CPP Transcription Factor Family AT3G22760 59.9 5.4e-46 183.0
Cone4ag0740 . 1 601 CPP Transcription Factor Family AT2G20110 52.0 4.8e-144 508.8
Cone7ag0677 . 100 532 CPP Transcription Factor Family AT2G20110 61.2 1.0e-138 491.1
Cone16ag0733 . 71 493 CPP Transcription Factor Family AT2G20110 57.2 4.8e-128 455.7
Cone4ag0740 . 1 567 CPP Transcription Factor Family AT4G29000 53.5 1.9e-154 543.5
Cone7ag0677 . 1 568 CPP Transcription Factor Family AT4G29000 53.8 2.4e-152 536.6
Cone2ag0303 . 1 542 CPP Transcription Factor Family AT4G29000 51.5 2.1e-145 513.5
Cone16ag0733 . 18 493 CPP Transcription Factor Family AT4G29000 55.1 1.3e-142 504.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029786 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45905 None None None None Cone TF