Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0275 ATGCAAGTCCCTAATTCCGAAGAAATCGCCACTAAATCCGCGGAAAACCCTGCTGAGCCTGAAGAATTGAAACCCTCTAAGCCGGTCTTAGCTGATGGAGAAGATAGTAATGGTGAAGATGACTCGATTCTTGACGTATCAGGGAAAAGCTTGGATTTTTCATTGCTGGAAAATTCCGAGGGAGCTGTGAAGGGGTTGTATATATATAAGAATGTGTTTAATTTAATCCCTAAATCATTAGGCGATATCGGGCGGTTGAGAGTGTTGAAGTTTTTCGGCAACGAGATCAATCTGTTCCCGTCGGAGTTGAGGAACTTAGTGGGACTGGAATGCTTGCAGGTGAGAATATCATCAACGGGATTTGGTCAGTTACCATTGAATAAATTAAGCGGTTTGAAGGAGCTTGAGCTGTCTAAAGTCCCCCCTAGGCCTTCTGCTCTTCCAATTCTTGGGGAGATTTCCGGCCTCAAGTGCTTGACCAAGCTTTCTGTCTGTCACTTCTCTCTAAGATATCTTCCTCCTGAAATTGGCTGCTTAAGTAATTTGGAACATCTAGATGTCTCATTCAATAAGCTGAAGCGTCTACCCACTGAAATAAGTTATTTGAGTGCCTTAATATCATTGAAAGTTGCTAATAATAAGTTGGTCGAACTACCATCAGCTTTGTCCTCCTTGCAGCGGCTGGAGAACATGGACCTGTCGCATAATAGGTTGACCTCTTTGGGCTCTCTTGAACTTGGCTCAATGCATAACCTGCAGGTGTTAAACTTACAGTACAACAGACTTCTGAGTAAATGTCAGATACCTTCCTGGCTACACTGCAATTTAGAAGGAAATGGTGAAGGCATAACCATTGAGGATTGTAGTAGTTCTTCAGTTGAAATGGATGTATATGAAAGCCCTATCCAAGTGAATGATGGAAGTTTATCACGTAGTGGCAATCATCATTCTTCATCAAACTTACTAACTGGATCATCAACAAATAGTCGATGCTTTGCTTCTCGAAGGTCGGGTAAGCGGTGGAAGCGACAATATTATTTGCAGCAAAAAGCTCGTCAAGAACGTTTGAACAACAGTAGGAAGTGGAAAGGAGTAGATCCTCCCGTGGTAACAACTATTAAAGCAGATGTAAATTGGCAACCTGAAAGCATAGACACAATAACATCGTACACATGTGAAGTTGTGTCTGAAGCTGTAAGTCTAGATGATGATAAGGAAATATATCCAGGAGAAGCAGAGAGTGTAAATTTACCAAACGGTCTTGAGAACGATAATTTTGGCTTCAAAAAGGGTCCTTTTGTTGAGAATGGCTCAAGTGTTGAGCCTGCCTCTACTGCAATGACTAAAACAAGTGAAGTTGAATGTTGCGAACCTGATGATGAATCTTTATCCTCCAAGCGGAATGGAGCAGATGATAAAGATGTAGGCTTCATTCCTGAGCTATCACAAAGTAGTGCCAAATCGAAGAGGGCTTCTGAAGGGGATCTTGGTAATCCGAAACCATGCAAGTCTCGTAAACCAGCCGAAGATAGTACAAATATATCTTGCAAGTATAGTAATAGTTCATATTGCAGCACTGAGGACCATTTACCAGACGGCTTCTATGATGCCGGCCGTGACCGGCCCTTCATGCCACTAAGCAATTATGAAGAAAATCTACATCTTGATTCTCGTGAAGTCATTGTTGTGGACAGGGAGCAGGATGAAGTGTTGGATGCTATTACCCTCTCTGCACAGGCATTGGTGCTCCATTTGAAGCAGATAAATCGGTTAAATTTAGATAGAAATCAAGTTGTTGACAACTTGCAAATTGCATCTTTGCTTGCTCTATTTGTATCTGATCATTTTGGAGGCAGTGATAGAAGTGCTATGATCGAAGGGATGAGAAAAACTGTTTCGGGGTCAAATTATCAAAAGCCGTTTGTTTGCACATGCTCGACTGGGAATCGAGATAGTATGAACACATTTAATAAACCTGTAATGGACTCTGATGAAGTTATGGGTCTTACGAATCTTTGTGAGAGATCTCTTCAGTCTATTAAAGCAAGACGGAATTCTATTGTAGTTCCTATAGGAGCACTGCAATTTGGTGTGTGCAGACATAGGGCACTGCTCCTGAAGTATCTATGTGACCGTATGGAACCTCCAGTACCTTGTGAGCTTGTGAGAGGTTACTTGGATTTCTTGCCACATGCCTGGAATGCTGTTCTGGTCAAGAGAGGTGGTTCTTATGTTCGAATGATGGTTGATGCCTGTCGGCCAAATGATATTCGAGAAGAAACAGACCCCGAGTATTTTTGCAGGTATGTTCCTCTCAGTAGGAGCAGAGTTCCTGTATCTACTGAAAGGATGCCCGTTCCAGGTGGTTCTTTCCCATCCTTATCCACTTGCGATGGCATTGACAAGTCACCCTCAAGTTCTCTTGTAAGGTGTAATCTGGGAACGCTTGAGGCTGCAGCAAAGGTTCGTAGTATGGAAATATGTGAGACTTCGGTAGAAGCGATTAGGAAGTTCGAGTACAATTGCTTAGGGGAAGTAAGAATACTTGGTGCTTTGAAACATCCATGCATCGTAAAAATGTACGGCCATCAGATATCTACCAAGTGGATTCCTTCAGTAGATGGAAAGTTAGAACGGAGAGTGCTTCAGTCCGCCATTTTTGTGGAGTATATCAAAGGGGGATCTTTGAAGAGTTATATTGACAAGCTGTCCGAAGCCAATGAGAAGCATGTCCCAGTGGAGCTGGCATTATATATAGCTAGGGATGTGACATGTGCTTTAGCCGAGCTTCATTCAAAGCATATAATTCACCGGGACATAAAAAGTGAAAACATCTTGATTGATTTAGATGAGAAGGGAGCTGATGGATCACCTGTTGTTAAGCTTTGTGATTTTGACAAAGCTGTCCCACTTCGTTCTTCAGTGCATACGTGCTGCATTGCTCACTATGGAATAGAATCCCCAGATTGTTGTGTTGGGACTCCTCGTTGGATGGCTCCAGAGGTTCTGCGGGCAATGCATAAACGCAATACATATGGACTGGAAGTGGATATCTGGTCGTTTGGATGCCTGCTATTGGAGTTGCTGACCTTGCAAATTCCATACTTGGACTTATCTGAAGAAGAGATTTACAACCAACTGAAGAGGGGCCAAAGACCGCAAGTGAGAGACGAACTGGAGTCACTGGGATCATCCAATGAGAGCTCAATGGCTCAGTCTGTTACTGAGCCAGAGGGATCGGAAGACGAACTTGAGACACTTGGGTTCCTCATTGATTTGTTTCGCCAGTGCACTATGGAAGACCCCAGAGACCGTCCAACGGCAGCAAAACTCCACGAAGTCCTTCTCTCCCGCACAACCAAATTTAGAAATTCAAGTAGTTTGTTAGAAGATTAG 3396 43.08 MQVPNSEEIATKSAENPAEPEELKPSKPVLADGEDSNGEDDSILDVSGKSLDFSLLENSEGAVKGLYIYKNVFNLIPKSLGDIGRLRVLKFFGNEINLFPSELRNLVGLECLQVRISSTGFGQLPLNKLSGLKELELSKVPPRPSALPILGEISGLKCLTKLSVCHFSLRYLPPEIGCLSNLEHLDVSFNKLKRLPTEISYLSALISLKVANNKLVELPSALSSLQRLENMDLSHNRLTSLGSLELGSMHNLQVLNLQYNRLLSKCQIPSWLHCNLEGNGEGITIEDCSSSSVEMDVYESPIQVNDGSLSRSGNHHSSSNLLTGSSTNSRCFASRRSGKRWKRQYYLQQKARQERLNNSRKWKGVDPPVVTTIKADVNWQPESIDTITSYTCEVVSEAVSLDDDKEIYPGEAESVNLPNGLENDNFGFKKGPFVENGSSVEPASTAMTKTSEVECCEPDDESLSSKRNGADDKDVGFIPELSQSSAKSKRASEGDLGNPKPCKSRKPAEDSTNISCKYSNSSYCSTEDHLPDGFYDAGRDRPFMPLSNYEENLHLDSREVIVVDREQDEVLDAITLSAQALVLHLKQINRLNLDRNQVVDNLQIASLLALFVSDHFGGSDRSAMIEGMRKTVSGSNYQKPFVCTCSTGNRDSMNTFNKPVMDSDEVMGLTNLCERSLQSIKARRNSIVVPIGALQFGVCRHRALLLKYLCDRMEPPVPCELVRGYLDFLPHAWNAVLVKRGGSYVRMMVDACRPNDIREETDPEYFCRYVPLSRSRVPVSTERMPVPGGSFPSLSTCDGIDKSPSSSLVRCNLGTLEAAAKVRSMEICETSVEAIRKFEYNCLGEVRILGALKHPCIVKMYGHQISTKWIPSVDGKLERRVLQSAIFVEYIKGGSLKSYIDKLSEANEKHVPVELALYIARDVTCALAELHSKHIIHRDIKSENILIDLDEKGADGSPVVKLCDFDKAVPLRSSVHTCCIAHYGIESPDCCVGTPRWMAPEVLRAMHKRNTYGLEVDIWSFGCLLLELLTLQIPYLDLSEEEIYNQLKRGQRPQVRDELESLGSSNESSMAQSVTEPEGSEDELETLGFLIDLFRQCTMEDPRDRPTAAKLHEVLLSRTTKFRNSSSLLED 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1234844 1240776 + Conep04aG0028400.1 Cone4ag0275 435253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0275 1131 MobiDBLite consensus disorder prediction 305 331 - -
Cone4ag0275 1131 Gene3D Ribonuclease Inhibitor 42 296 IPR032675 -
Cone4ag0275 1131 ProSiteProfiles Leucine-rich repeat profile. 181 202 IPR001611 GO:0005515(InterPro)
Cone4ag0275 1131 MobiDBLite consensus disorder prediction 14 29 - -
Cone4ag0275 1131 MobiDBLite consensus disorder prediction 493 507 - -
Cone4ag0275 1131 MobiDBLite consensus disorder prediction 453 474 - -
Cone4ag0275 1131 ProSiteProfiles Leucine-rich repeat profile. 227 248 IPR001611 GO:0005515(InterPro)
Cone4ag0275 1131 SMART serkin_6 808 1120 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0275 1131 FunFam Leucine-rich repeat protein kinase family protein 840 1121 - -
Cone4ag0275 1131 MobiDBLite consensus disorder prediction 432 512 - -
Cone4ag0275 1131 Gene3D Transferase(Phosphotransferase) domain 1 808 1128 - -
Cone4ag0275 1131 SMART LRR_bac_2 202 221 - -
Cone4ag0275 1131 SMART LRR_bac_2 225 244 - -
Cone4ag0275 1131 SMART LRR_bac_2 179 198 - -
Cone4ag0275 1131 MobiDBLite consensus disorder prediction 1058 1076 - -
Cone4ag0275 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 935 947 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0275 1131 SMART LRR_typ_2 249 274 IPR003591 -
Cone4ag0275 1131 SMART LRR_typ_2 202 224 IPR003591 -
Cone4ag0275 1131 SMART LRR_typ_2 179 201 IPR003591 -
Cone4ag0275 1131 SMART LRR_typ_2 225 248 IPR003591 -
Cone4ag0275 1131 SUPERFAMILY RNI-like 62 275 - -
Cone4ag0275 1131 Pfam Ethylene-responsive protein kinase Le-CTR1 657 750 - -
Cone4ag0275 1131 MobiDBLite consensus disorder prediction 1054 1082 - -
Cone4ag0275 1131 ProSiteProfiles Protein kinase domain profile. 780 1115 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0275 1131 SUPERFAMILY Protein kinase-like (PK-like) 816 1115 IPR011009 -
Cone4ag0275 1131 FunFam At1g04210 117 302 - -
Cone4ag0275 1131 MobiDBLite consensus disorder prediction 1 42 - -
Cone4ag0275 1131 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 200 1119 - GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Cone4ag0275 1131 SMART LRR_sd22_2 179 204 - -
Cone4ag0275 1131 SMART LRR_sd22_2 225 246 - -
Cone4ag0275 1131 Pfam Protein kinase domain 838 1111 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0275 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0275 Cone-Chr4:1234844 Cone2ag0700 Cone-Chr2:32593335 5.22E-19 dispersed
Cone18ag0623 Cone-Chr18:3194144 Cone4ag0275 Cone-Chr4:1234844 1.01E-10 wgd
Cone4ag0275 Cone-Chr4:1234844 Cone7ag0282 Cone-Chr7:1181029 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82728 PF00069 Pkinase 2.50E-72 CL0016 Cone PK