Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0276 ATGCCTATAAGGCAGATGAAAGAGAGCTCAGAGCAGCACCTAGTAATCAAAACCCACTTTCACAACTCTATGAACAACCCCCCTGTTCAGAAAGCACCCAAAACTGCCCAAAATGGTAAAGGTCCTCCTAATCAAGAAGCCCAGAACACAAAGACTTCTCCTATGAAAAACAGGGGAAGAAGGCGAGGAAGAGGTGGCCGTAAATCCGATCAAGGTGGTGGTGATGTTTGTCTCCGGCCTAGTTCCAGGCATTGCACCATGGTGAATGCACCTATAGCCCGAGAAAGTACCCCAAACGGGTCTGTGGAAAATGGTTCCAGTTTGTGTGAAGTAGAGATGGGTTTTCCTAGTTCAAGCAAATCTTTGAACTTTGCACCTAGGCCTGGGTTCGGCCAAGTTGGGACTAAGTGTATTGTGAAGGCTAACCATTTCTTATCCGAGTTGCCGGAGAAAGACTTGAATCAATACCATGTAACAATAACTCCTGAAGTAGTATCAAGAACTATGAACCGAGCAATCATGGCTGAGCTAGTGAGGCTATACAGAGAGTCTGATTTAGGAATGAGATTACCTGCTTATGATGGCCGAACGAGTTTGTACACTGCTGGGGAGCTTCCATTTGTTTTTAAGGTGCTCAACATTAAGCTTATAGATGAGGATGGAATGAACGGTAGCAAGAGGGAGAGAGAATATAAGGTGGCTCTGAAATTTGTTGCTCGGGTCAACTTGCATCATTTGGGCCAGTTCTTGGCTGGTAAGCGAGCTGATGCTCCACAAGAAGCTCTTCAAGTACTTGATATCGTACTAAGAGAGCTTTCATCAAAAAGGTACTGCCCTGTTGGGAGATCCTTCTTTTCTCCTCATATAAAGTCACCTCATCGTCTTGGTGATGGGTTGGAGTCTTGGTGTGGATTTTATCAGAGTATTAGGCCTACTCAGATGGGCCTGTCCTTGAATATAGATATGGCTTCCGCTGCCTTTATAGAGCCACTGCCCGTAATTGAGTTTGTAGGCCAGCTTCTGGGGAAAGATGTTTTGTTAAGGCCATTATCTGATTCTGATCGTGTAAAGATTAAGAAGGCCCTTAGAGGAGTGAAAGTTGAAGTTACTCACAGAGTTAATGTACGAAGAAAGTACCGTGTTTCAGGGTTGACATCTCAACCTACTAGAGAACTAGTTTTCCCTGTGGATGATGATTCAACTATGAAGTCAGTAGTAGAGTACTTCCAGGAGGAATATGGCTTCACTATTCAACATGCACATCTCCCTTGCCTTCAAGTTGGAAATCAGAAGAAGGCAAATTATTTACCTATGGAGGCATGCAAAATTGTTGAAGGGCAGCGGTATACTAAAAGGCTGAACGAGCGACAAATTACTGCCCTATTGAAAGTTACTTGCCAAAGACCTAGGGACCGCGAAAATGACATTATACAGACTCTACAGCATAATTCCTATGATCAAGATCCATATGCAAAGGAGTTTGGTATTAAAATCAGTGAAAAAATGGCTTCCGTGGAGGCCCGAATCTTACCTCCTCCTTGGCTTAAATATCATGATACTGGAAAAGAAAAGGACTGTCTCCCTCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATCAATGGGATGACTGTAAACCGTTGGGCTTGTATTAACTTCTCTAGGAGTGTTCAAGAGAGCATTGCTCGTGGTTTTTGTAATGAACTTGCTCAAATGTGTCAAGTGTCTGGAATGGAATTCAATCCGGATCCTGTAATTCCAATCTACAATGTGAAGCCCGAGCAAGTGGAAAAAGCCTTGAAGCATGTGTATCATGCTGCTATGAACAAAACCAATGGAAAAGAGTTGGAGTTACTGTTAGCTATTTTGCCTGACAATAATGGATCACTCTATGGTGATCTCAAGCGAATTTGTGAAACCGATCTTGGTATAATCTCTCAATGTTGTCTTACGAAACATGTCTTCAAAATCAGCAAGCAGTACTTGGCTAACGTGTCATTGAAAATCAACGTTAAGTTGGGTGGTAGAAACACTGTTCTTCTAGATGCTATTAGCTGCAGAATACCATTAGTGAGCGATATCCCAACTATCATTTTTGGAGCTGATGTTACTCACCCAGAAAATGGAGAAGATTCTAGCCCTTCTATAGCCGCTGTAGTTGCCTCACAAGATTGGCCGGAGGTTACAAAGTATGCCGGATTGGTCTGTGCTCAAGCTCACAGACAGGAACTCATCCAAGACTTGTATAAAACTTGGCAAGATCCTGTTCGTGGCACTGTTAGTGGCGGTATGATCAGGGATCTTCTTGTTTCCTTTAGAAAGGCAACGGGGCAAAAACCATTAAGGATAATATTTTACAGGGACGGTGTAAGTGAAGGACAGTTTTATCAAGTTTTGCTTTACGAGTTGGATGCAATAAGGAAGGCTTGTGCTTCACTAGAACCGAACTATCAACCACCTGTGACATTCATTGTGGTACAAAAACGACACCATACCCGACTCTTTGCTAACAACCATAGAGACCGAAGCAGCTCAGATAAGAGCGGGAATATTTTGCCTGGAACTGTGGTTGATTCTAAGATATGCCATCCTACAGAATTCGATTTCTATCTCTGTAGCCATGCTGGTATTCAGGGTACAAGCCGGCCAGCTCATTACCATGTTCTTTGGGATGAGAACAATTTTACTGCGGATGGAATCCAGTCACTGACAAACAACCTCTGTTACACCTATGCAAGATGCACCCGTTCTGTTTCTGTTGTCCCTCCAGCATATTATGCGCACTTAGCTGCATTCCGAGCTCGATTCTACATGGAACCAGAAATTCAAGAGAATGACTCGACCGGTCATACTATGAAGAAAACAAGAGGAGCAGGGGAAACCGGAGTTCGCCCATTGCCAGCTTTGAAGGAAAACGTAAAGAGAGTAATGTTTTATTGTTAG 2946 43.18 MPIRQMKESSEQHLVIKTHFHNSMNNPPVQKAPKTAQNGKGPPNQEAQNTKTSPMKNRGRRRGRGGRKSDQGGGDVCLRPSSRHCTMVNAPIARESTPNGSVENGSSLCEVEMGFPSSSKSLNFAPRPGFGQVGTKCIVKANHFLSELPEKDLNQYHVTITPEVVSRTMNRAIMAELVRLYRESDLGMRLPAYDGRTSLYTAGELPFVFKVLNIKLIDEDGMNGSKREREYKVALKFVARVNLHHLGQFLAGKRADAPQEALQVLDIVLRELSSKRYCPVGRSFFSPHIKSPHRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVGQLLGKDVLLRPLSDSDRVKIKKALRGVKVEVTHRVNVRRKYRVSGLTSQPTRELVFPVDDDSTMKSVVEYFQEEYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDIIQTLQHNSYDQDPYAKEFGIKISEKMASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESIARGFCNELAQMCQVSGMEFNPDPVIPIYNVKPEQVEKALKHVYHAAMNKTNGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKLGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSSDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEIQENDSTGHTMKKTRGAGETGVRPLPALKENVKRVMFYC 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1247320 1253812 - Conep04aG0028700.1 Cone4ag0276 435254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0276 981 Pfam Mid domain of argonaute 528 605 IPR032473 -
Cone4ag0276 981 Gene3D paz domain 324 449 - -
Cone4ag0276 981 CDD Piwi_ago-like 489 939 IPR045246 -
Cone4ag0276 981 SMART PAZ_2_a_3 335 467 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone4ag0276 981 SMART Piwi_a_2 619 940 IPR003165 GO:0003676(InterPro)
Cone4ag0276 981 FunFam protein argonaute 10-like 688 981 - -
Cone4ag0276 981 FunFam Protein argonaute-2 324 450 - -
Cone4ag0276 981 Pfam PAZ domain 357 461 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone4ag0276 981 Pfam Argonaute linker 1 domain 279 329 IPR014811 -
Cone4ag0276 981 ProSiteProfiles Piwi domain profile. 619 940 IPR003165 GO:0003676(InterPro)
Cone4ag0276 981 FunFam Argonaute 10 509 682 - -
Cone4ag0276 981 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 127 948 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cone4ag0276 981 SMART DUF1785_2 278 330 IPR014811 -
Cone4ag0276 981 Pfam Argonaute linker 2 domain 471 517 IPR032472 -
Cone4ag0276 981 Pfam Piwi domain 620 939 IPR003165 GO:0003676(InterPro)
Cone4ag0276 981 MobiDBLite consensus disorder prediction 22 81 - -
Cone4ag0276 981 Gene3D - 688 981 IPR036397 GO:0003676(InterPro)
Cone4ag0276 981 ProSiteProfiles PAZ domain profile. 332 445 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone4ag0276 981 MobiDBLite consensus disorder prediction 22 54 - -
Cone4ag0276 981 SUPERFAMILY PAZ domain 325 485 IPR036085 GO:0005515(InterPro)
Cone4ag0276 981 CDD PAZ_argonaute_like 330 444 - -
Cone4ag0276 981 Pfam N-terminal domain of argonaute 136 269 IPR032474 -
Cone4ag0276 981 SUPERFAMILY Ribonuclease H-like 606 940 IPR012337 -
Cone4ag0276 981 Gene3D - 509 682 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0363 Cone-Chr13:3287540 Cone4ag0276 Cone-Chr4:1247320 0 dispersed
Cone16ag0768 Cone-Chr16:8640644 Cone4ag0276 Cone-Chr4:1247320 3.98E-103 dispersed
Cone4ag0276 Cone-Chr4:1247320 Cone7ag0283 Cone-Chr7:1195885 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0276 K11593 - vvi:100244311 1753.8