Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag0278 | ATGACGGCTGACATCTTACATGAACACTTCGACCGCATTCGGTATCTACTTGATGCCTCCAAAACAAACAGCAAACCAAACAAAAGATGGCAATCTGCTTTTCTCACCATCTACTGCTCGAGAGCTCTCTTGAACAGTTTCTTGTTAAACAAGCAACCTCCACTCCCTCCTCCGTCTTCATCTTTCACTAGCATCGACATTAGCTCCAAAAACGCCTTCAAAATAGACAAAACCACCCTCATTCAACTCGTCAAGGAAAAACGTCTCAAAGAGCTTCGAGACATCCATGGTGGCGTCAACGGCATAGCTGCAGCCCTCAAAACCGATATCGATCACGGAATCAACGGTCAAGATGATCAAGACATTATTCTTCGACAAAAAGAATTTGGTTCCAATACATACAAGAAGCCTCCCCCAAAAAACTTCCTTCATTTCGCTGTAGAAGCCTCTAAAGACCTCACCATCTTCATCCTTCTTGCGTGCGCCTCGCTTTCCCTCGGATTCGGTATCAAAGAGCATGGCTTGAAAGAAGGATGGTATGATGGAGGAAGCATCTTCCTTGCAGTTTTCATAGTCATCATTTTCTCCGCAATAAGTAACTACAAACAGAACAGACAATTTAACAAGCTTTCCAAACTAAGTGACAACATCCAAATCGAGGTTGCAAGAAACGGAAGAAGACAAAACATCTCGATTTTCGATATCCTCGTGGGAGACATTGTCTGCTTGAAGATTGGAGATCAAGTTCCAGGAGATGGGTTGTTCTTAAACGGGCATTCATTACTAGTTGATGAATCAAGCATGACGGGTGAGTCCGATCATGTAGAAATCAATCATGAAAATCATCCATTTTTGTTCTCTGGGACAAAAATTGCAGATGGGTACGGTCAGATGCTGGTCACTTGTGTCGGATTGAACACGACTTGGGGAGAGATGATGAGCTCAATAAGTCGTGATAATCACGAGATCACTCCGTTACAAGAGAGGCTAAACAAATTGACATCTTCAATAGGTAAGGTTGGTCTGACAGTTGCTTTTCTAGTTCTTGTTGTGCTCTTGGTCCGTTATTTTACGGGAAACACAGAGGACGATAACGGAGTAAGAGAGTATAACGGGAAGCAGACGAGTAGTGATGATGTTATCAATGCTGTGATTGGGATCGTAGCAGCGGCTGTGACGATTGTCGTGGTGGCAATTCCGGAAGGTTTGCCGTTAGCCGTTACTTTGACTCTTGCTTATTCTATGAAGAGAATGATGGGCGACAATGCCATGGTCCGGAAATTATCGGCTTGTGAAACTATGGGGTCTGCTACAACGATTTGTACTGATAAAACCGGCACGCTCACTTTGAACCAGATGAAGGTTACAAAGTTCTGGATCGGCATGGAATCTATGGAGCAAGGTACTACTACTACTACTTCTACGTCCACAATTTCTTCGGATCTTCTAGAAACAATCCGGCAAGGAATTGCTGTTAATACAACTGGGAGTGTTTATTACAAGCCCAATCCATCGGGCCAGGCGGAAGTAGATATCACTGGTAGTCCAACCGAGAAAGCCATTCTATCATGGGCCGTGACAGAAATGAACATGAACATGGAGGAAATAACCAAGAATTGTGCAGTATTACATGTCGAGACATTCAATTCGCAGAAGAAACGGAGCGGTGTTTTAATCAGAAAGAACGTGGACAACACAATCCATGTCTATTGGAAAGGAGCAGCAGAGATGATTCTAGAAATGTGTTCAAGTTACTATGACGCTTCAGGCAATGTAAATGATTTGGGCGATGTTGCAAAGATGAAAATTGTGAAGATCATTCAAGGTATGGCTGCTAGCAGTCTTAGATGCATAGCTTTTGCACACTCACGGGTTTCAGACGATCAAACGGAGCAAAAGAAACAGATAAAAGAAAGTAACTTGATCCTATCAGGATTGGTCGGGATTAAGGACCCATGTAGGCCCGGAGTGAAAGAGGCTGTAGAAGGATGCCAGATTTCCGGAGTAAACATCAAAATGATTACAGGAGACAATGTTTTCACGGCAAAAGCAATCGCCACAGAATCTGGGATTCTCCGCCCGAACCAGGATCTGAATGGAGCGGTCATAGAAGGTTCCCAATTCAGAAACTACACCCCAGAAGAAAGGTTGGAGAAAGTAGACAAAATCTGTGTGATGGCTAGATCCTCTCCGTTCGATAAACTTCTCATGGTGCAGTGCTTGAAACAGAAAGGCCATGTCGTTGCAGTCACAGGAGATGGCACGAACGATGCACCGGCTTTGAAAGAAGCAGATATCGGCCTTTCTATGGGGATACAAGGGACAGAAGTGGCAAAAGAGAGCTCCGATATTGTCATATTGGACGATAATTTTTCGTCGGTTGTTACGGTTTTAAAATGGGGAAGATGTGTTTATAACAACATTCAGAAGTTCCTCCAGTTCCAACTAACTGTCAATGTGGCCGCTCTTGTCATAAACTTTGTGGCTGCAGTTTCGGCCGGAGAAGTTCCCTTAACGGCCGTGCAGTTACTGTGGGTCAACCTGATAATGGATACGTTGGGTGCTTTAGCTTTAGCCACAGAGCGGCCCACCAAGGAACTTATGGACAGTCCGCCCGTGGGCCGGACCGCGCCGCTCATAACCAACATCATGTGGAGGAACTTGCTGTTTCAGGCTTTGTATCAGGTAGTTGTCCTATTGACCTTACAGTTCAAAGGCGAATCGATTTTTGGGGTGTCTAAGGCGGTGAACGAGACGTTGATTTTCAATACGTTTGTACTCTGCCAAGTGTTCAATGAGTTCAATGCTAGGAATCTAGAGAAGAAGAACGTGTTTAAAGGGATACTGAAGAACAGGTTGTTTTTGGGGATCATAGTGTTTACCATTGTTCTTCAGATCATGATGGTGGAGTTTCTGAAGAAGTTTGCTGGTACAGAGAGGTTGAACTGGGGTCAATGGGGCGCTTGTGTTGGAATTGGAGCCGTGTCGTGGCCGATCGGATGGGTCGTGAAGTTCATACCTGTTCCTCAGAAGTCAATCTTCCGTTATCTGAAGATAAAGACATCAAACCGAAGACATCTAGATTTATAG | 3090 | 44.37 | MTADILHEHFDRIRYLLDASKTNSKPNKRWQSAFLTIYCSRALLNSFLLNKQPPLPPPSSSFTSIDISSKNAFKIDKTTLIQLVKEKRLKELRDIHGGVNGIAAALKTDIDHGINGQDDQDIILRQKEFGSNTYKKPPPKNFLHFAVEASKDLTIFILLACASLSLGFGIKEHGLKEGWYDGGSIFLAVFIVIIFSAISNYKQNRQFNKLSKLSDNIQIEVARNGRRQNISIFDILVGDIVCLKIGDQVPGDGLFLNGHSLLVDESSMTGESDHVEINHENHPFLFSGTKIADGYGQMLVTCVGLNTTWGEMMSSISRDNHEITPLQERLNKLTSSIGKVGLTVAFLVLVVLLVRYFTGNTEDDNGVREYNGKQTSSDDVINAVIGIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMGDNAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWIGMESMEQGTTTTTSTSTISSDLLETIRQGIAVNTTGSVYYKPNPSGQAEVDITGSPTEKAILSWAVTEMNMNMEEITKNCAVLHVETFNSQKKRSGVLIRKNVDNTIHVYWKGAAEMILEMCSSYYDASGNVNDLGDVAKMKIVKIIQGMAASSLRCIAFAHSRVSDDQTEQKKQIKESNLILSGLVGIKDPCRPGVKEAVEGCQISGVNIKMITGDNVFTAKAIATESGILRPNQDLNGAVIEGSQFRNYTPEERLEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFSSVVTVLKWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPTKELMDSPPVGRTAPLITNIMWRNLLFQALYQVVVLLTLQFKGESIFGVSKAVNETLIFNTFVLCQVFNEFNARNLEKKNVFKGILKNRLFLGIIVFTIVLQIMMVEFLKKFAGTERLNWGQWGACVGIGAVSWPIGWVVKFIPVPQKSIFRYLKIKTSNRRHLDL | 1029 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1262302 | 1265568 | - | Conep04aG0028900.1 | Cone4ag0278 | 435256 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag0278 | 1029 | PANTHER | CATION TRANSPORTING ATPASE | 70 | 1008 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Cone4ag0278 | 1029 | SUPERFAMILY | HAD-like | 439 | 856 | IPR036412 | - | |
| Cone4ag0278 | 1029 | Gene3D | - | 116 | 317 | - | - | |
| Cone4ag0278 | 1029 | Pfam | haloacid dehalogenase-like hydrolase | 610 | 765 | - | - | |
| Cone4ag0278 | 1029 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 447 | 657 | IPR023299 | GO:0000166(InterPro) | |
| Cone4ag0278 | 1029 | FunFam | Calcium-transporting ATPase | 195 | 317 | - | - | |
| Cone4ag0278 | 1029 | Pfam | E1-E2 ATPase | 219 | 419 | - | - | |
| Cone4ag0278 | 1029 | Gene3D | - | 148 | 1006 | - | - | |
| Cone4ag0278 | 1029 | Gene3D | - | 438 | 796 | IPR023214 | - | |
| Cone4ag0278 | 1029 | FunFam | Calcium-transporting ATPase | 640 | 796 | - | - | |
| Cone4ag0278 | 1029 | FunFam | Calcium-transporting ATPase | 451 | 652 | - | - | |
| Cone4ag0278 | 1029 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 443 | 449 | IPR018303 | - | |
| Cone4ag0278 | 1029 | PRINTS | H+-transporting ATPase (proton pump) signature | 603 | 621 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone4ag0278 | 1029 | PRINTS | H+-transporting ATPase (proton pump) signature | 751 | 767 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone4ag0278 | 1029 | PRINTS | H+-transporting ATPase (proton pump) signature | 783 | 808 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone4ag0278 | 1029 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 69 | 1008 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Cone4ag0278 | 1029 | Pfam | Cation transporting ATPase, C-terminus | 836 | 1006 | IPR006068 | - | |
| Cone4ag0278 | 1029 | Pfam | Cation transport ATPase (P-type) | 507 | 585 | - | - | |
| Cone4ag0278 | 1029 | SFLD | p-type atpase | 423 | 804 | IPR044492 | - | |
| Cone4ag0278 | 1029 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 95 | 1008 | IPR023298 | - | |
| Cone4ag0278 | 1029 | Gene3D | - | 451 | 652 | IPR023299 | GO:0000166(InterPro) | |
| Cone4ag0278 | 1029 | Pfam | Cation transporter/ATPase, N-terminus | 96 | 165 | IPR004014 | - | |
| Cone4ag0278 | 1029 | SFLD | C1.7: P-type atpase like | 423 | 804 | - | - | |
| Cone4ag0278 | 1029 | SMART | Cation_ATPase_N_a_2 | 94 | 170 | IPR004014 | - | |
| Cone4ag0278 | 1029 | FunFam | Calcium-transporting ATPase | 768 | 1010 | - | - | |
| Cone4ag0278 | 1029 | NCBIfam | HAD-IC family P-type ATPase | 724 | 832 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone4ag0278 | 1029 | NCBIfam | HAD-IC family P-type ATPase | 385 | 467 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone4ag0278 | 1029 | PRINTS | P-type cation-transporting ATPase superfamily signature | 751 | 770 | - | - | |
| Cone4ag0278 | 1029 | PRINTS | P-type cation-transporting ATPase superfamily signature | 667 | 677 | - | - | |
| Cone4ag0278 | 1029 | PRINTS | P-type cation-transporting ATPase superfamily signature | 775 | 787 | - | - | |
| Cone4ag0278 | 1029 | PRINTS | P-type cation-transporting ATPase superfamily signature | 264 | 278 | - | - | |
| Cone4ag0278 | 1029 | PRINTS | P-type cation-transporting ATPase superfamily signature | 441 | 455 | - | - | |
| Cone4ag0278 | 1029 | PRINTS | P-type cation-transporting ATPase superfamily signature | 645 | 656 | - | - | |
| Cone4ag0278 | 1029 | SUPERFAMILY | Calcium ATPase, transduction domain A | 219 | 315 | IPR008250 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone20ag0830 | Cone-Chr20:5889956 | Cone4ag0278 | Cone-Chr4:1262302 | 1.25E-208 | dispersed | |
| Cone4ag0278 | Cone-Chr4:1262302 | Cone4ag1612 | Cone-Chr4:12258704 | 4.01E-261 | dispersed | |
| Cone10ag0678 | Cone-Chr10:3288120 | Cone4ag0278 | Cone-Chr4:1262302 | 0 | wgd | |
| Cone17ag0579 | Cone-Chr17:3019882 | Cone4ag0278 | Cone-Chr4:1262302 | 0 | wgd | |
| Cone20ag0829 | Cone-Chr20:5887976 | Cone4ag0278 | Cone-Chr4:1262302 | 5.32E-214 | wgd | |
| Cone3ag0703 | Cone-Chr3:3598745 | Cone4ag0278 | Cone-Chr4:1262302 | 9.48E-113 | wgd | |
| Cone4ag0278 | Cone-Chr4:1262302 | Cone7ag0285 | Cone-Chr7:1209868 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag0278 | K01537 | - | vvi:100254645 | 1425.61 |