Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0285 ATGCCGCCCAACCGACCAACCCAAACTCCACCATCCACCGGATCAATCCTCCTCGGAAAGTACCATATCGGCCGCCTACTGGGCAGAGGCAGCTTCGCCAAGGTTTACCAAGCCCATGCTTTAACCGATGACAACACAACAGTCGCGGTTAAAATTATCGACAAGAACAAAACCATCGACGTCGACATGGAACCTCGTGTACTCCGAGAAATAGCTGCCATGCGCCGCCTTCATCACCACCCAAACATTCTCAAAATCTACGAAGTCATGGCCACCAAGTCCAAAATCTACCTTGTCGTCGAGTATGCCTCCGGCGGCGAACTCTTCACCAAAATTTCCCAACGTGGACGGCTCAAAGAACAGGAAGCTCGCCGTTACTTCAAACAACTAGTCTCAGCTCTCAATTTTTGCCACCAAAATGGTGTCGCCCACCGTGACGTGAAGCCGCAAAACCTCCTTCTAGACAACAATGGAAACGTCAAAATCTCGGACTTTGGGCTGTCAGCTTTACCCGAACAGCTCAGGAACGGTATGCTCCACACGGCATGTGGGACGCCGGCTTACACCGCACCAGAGGTCTTGTCCCGGCGTAGTTACGACGGCGCCAAGGCTGACTCATGGTCTGTCGGAGTAATACTGTATCTCATGCTCTCCGGCCACCTCCCTTTTGACGATATTAACCTTGGAGCTATGTATAAGAAAATCCATCTACGGCAATACCAAATCCCGGGTTGGGTTTCAAAGTCTGCTCGGTACTTGATTTATCGATTGCTCGACCCGGATCCCAATACGAGGATGCACATGGAGGATCTAATGCAGAGTTCGTGGTTTAAAACCGAAAGATCACTTGAATTGAAGTATCGAAATGAGTTTACTGGGGATAGTAGTTGTAAAGTAGTGGATATGAATGCGTTTGATATAATATCGATGTCCTCGGGGTTGGACCTGTCAGGTTTGTTTGAAACGGAGGGGGGTAGGAAGGAGAAGAGGTTTACGACAAGAGGGAGAGTGGAGGAGGTGGAGGAGAGGGTGAGTGAGATGGGGAGGGATTTAGGGTATGGAGTGGAGAGGAAGAAGGGTTGCGGGATTAGACTGTGGAAAGCGAAGGTGGTTTTGTCGGTGGAGGTGGTGGAAATAGTGGCGGCGGAATTGGTGAGGGTTGATATTAAGGTGGTGGAAGGTAGAGTGGAGTTTGAGGTGATAGAATGGGAGGATTTTCAAACAAAATTACAAGGCATTCGAGATAGGAGTTTAATCAATCCATGTGCGTAA 1272 49.37 MPPNRPTQTPPSTGSILLGKYHIGRLLGRGSFAKVYQAHALTDDNTTVAVKIIDKNKTIDVDMEPRVLREIAAMRRLHHHPNILKIYEVMATKSKIYLVVEYASGGELFTKISQRGRLKEQEARRYFKQLVSALNFCHQNGVAHRDVKPQNLLLDNNGNVKISDFGLSALPEQLRNGMLHTACGTPAYTAPEVLSRRSYDGAKADSWSVGVILYLMLSGHLPFDDINLGAMYKKIHLRQYQIPGWVSKSARYLIYRLLDPDPNTRMHMEDLMQSSWFKTERSLELKYRNEFTGDSSCKVVDMNAFDIISMSSGLDLSGLFETEGGRKEKRFTTRGRVEEVEERVSEMGRDLGYGVERKKGCGIRLWKAKVVLSVEVVEIVAAELVRVDIKVVEGRVEFEVIEWEDFQTKLQGIRDRSLINPCA 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1311433 1312704 + Conep04aG0029600.1 Cone4ag0285 435263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0285 423 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
Cone4ag0285 423 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165(InterPro)
Cone4ag0285 423 SMART serkin_6 21 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0285 423 ProSiteProfiles Protein kinase domain profile. 21 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0285 423 Pfam Protein kinase domain 21 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0285 423 CDD CIPK_C 303 394 - -
Cone4ag0285 423 SUPERFAMILY Protein kinase-like (PK-like) 17 286 IPR011009 -
Cone4ag0285 423 Gene3D Transferase(Phosphotransferase) domain 1 105 299 - -
Cone4ag0285 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0285 423 Gene3D Kinase associated domain 1, KA1 300 414 - -
Cone4ag0285 423 FunFam CAMK family protein kinase 16 305 - -
Cone4ag0285 423 FunFam Non-specific serine/threonine protein kinase 14 107 - -
Cone4ag0285 423 Pfam NAF domain 302 356 IPR004041 GO:0007165(InterPro)
Cone4ag0285 423 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 370 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone4ag0285 423 ProSitePatterns Protein kinases ATP-binding region signature. 27 51 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0285 Cone-Chr4:1311433 Cone7ag0077 Cone-Chr7:332438 5.29E-111 dispersed
Cone11ag0941 Cone-Chr11:7685584 Cone4ag0285 Cone-Chr4:1311433 1.83E-21 wgd
Cone18ag0616 Cone-Chr18:3122230 Cone4ag0285 Cone-Chr4:1311433 2.25E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82729 PF13943 WPP 1.70E-32 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0285 K12761 - csv:101215156 504.982