Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0294 ATGGCTCTTCTTCCCAGTCGGCAGTTCCACCCACTAACCTTCCTTGATTCATTTCAAAGCTCCTTCTCAACATTCCATGGCTCTCAAATCTATCTCTCCAGGTACAGTGCTTCTTTTCCATTAAAAAAACACACTTTATATACAACCCAGATTACTATCACTTCCAGTTTAGTTTCTGAACAAAACCCAATTGGAAGGTCTAATTTCTTTAGCCCAAGCAAACCCATTTCCCCATGTAATTACGGCAGGATAGTATGCTTTAGCAATTGGATAGATAAATGGAATGAAACCCAGAAACAGAATCGGCCGAAAACACCAAAAGCCATATTAGATTCTGATTATCAAAGTAGTGATAGTGAGCAAGTTGATAGTGGAGGTAGTACAATGGAGAGGATTGTTGAGAAATTGAAGAAATTTGGGTACGTGAAGGATGAAAATAATGTGAGTAAAAGGATGAAAGAAGATGAGGGCATGGTTGAAAAAGGGTCTGTAGAGGATATTTTTTATATGGAAGAAGGAATTTTGCCGAATAGCCGAGGCGGATTTTCAAAAGAATCTTCGTTGGGTTTGGAGGATGTGTTTGGAGGGAATGAAGGAGGAGAGGTGAGGTTTCCATGGGAGAAGAGAAAGGAAAAGGAGGAGGAAGGAGAAGGGAGTTCAGCAAGGAAGAAGGGAAGAACATCTTTGGCTGAGTTGACTCTTCCAGAATCAGAGTTGAGGAGGTTGAGGAATTTGACTTTTCAGAAGAAGCACAAGATGAAAATCGGTGGATCCGGCGTTACTCAATCCGCTGTTGATACCATCCATGAGAAATGGAAGACGGAAGAGATTGTGAGGCTCAAAATTGAAGGTCCGCCTGCCCTTAACATGAAGAGGATGCATGAAATACTAGAGAGAAAAACTGGTGGACTAGTTGTCTGGAGGTCAGGAACTACTGTTTCTTTGTATAGAGGGGTAAGCTATGAGATCCCTGGACCAAAGCTGAACAAAAAGATGTACAGAAAAACCGATATATTTTCTTCATCTTCTTCGCCTGAATCTATTGACCAAGCCGCCATAGTTCCTTCTAAACTTGGTTCATATACTAATAACATAGATACAGCACAAGTGAAGGCAGAGATTAATTCAGAGGATAACAGAGAAGAGTTACCAGAAAAAAAATATGAGGATGAAGTAGAACAATTATTGAATAGTTTGGGCCCGAGATATGCAGATTGGCCTGGATGTGATCCTTTGCCTGTTGATGCAGATCTGCTCTCTGGAATAGTTCCTAATTACGAGCCTCCGTTTAGAATACTTCCTTATGGAGTGAGGTCCAATCTTGGAGTTAAAGAAGCAACAGCTTTGCGAAGAGTTGCTAGAGTTCTCCCTCCGCATTTTGCTCTAGGCAGGAATAGGCAGCTCCAAGGGTTGGCTGTTGCTATGTCTAAGTTATGGGAAAGAAGTTCAATTGCAAAGATTGCTTTGAAAAGGGGTGTCCAGCTTACGACAAGTGAGAGAATGGCCGAAGAGCTCAAGAAACTGACAGGGGGAGTTCTGCTTTCTAGAAACAAGGACTTTTTGGTCTTTTACCGAGGGAAGAACTTTCTATCTCCAGAGGTGACTGAGGCTTTACTGGAAAGGGAGAGATTGGCTAAGTCCTTACAAGACGAAGAGGAGCTTGCTCGGTTAAGAGCATCAGCTTTAGTCACACCAGATGTCATAAACACCAAGCACTCCGGAATTGCGGGTAGTCTTGGAGAAACAATGGATGCAGATGCTAAGTGGGGAAAGAATCTAGATGATCGGCTTAAACAGAAAGTGATGAAAGAAGCAGAAATAACAAGGCATGCTGACCTTGTTCGGAAGCTCGATCGGAAGCTTAATCTTGCAGAAAGAAAGTTAATGAGAGCAGAAAGAGCCTTATCTAAGGTAGAAGAGTCTTTGAAACCTTCCAAGCGACAAGCTGACCCTCAGAGCATAACGGAAGAGGAGAGATTTATGTTTCGCAAGCTAGGCTTACGCATGAAAGCTTTCTTACTTCTTGGAAGGCGAGGAGTTTTTGACGGTACAGTGGAGAACATGCACTTGCATTGGAAATACAGAGAATTGGTAAAGATCATGGTTAAGGCTCCGTCTTTTGACCAGGTCAAGAATATTGCATTAGCACTCGAGGCAGAAAGTGGAGGCGTGTTAGTTTCCGTAGATAAAGTTTCAAAAGCATTTGCTATAGTTTTATTCCGTGGAAAAGACTATAGTAGGCCTTCCATGTTGAGACCGAAGAATCTTTTGACGAAGCGGAAGGCCTTAGCCCGTTCGATCGAGCTTCAAAGACATGAAGCCCTACTCAATCATATATCCGCTATGCAGACTAAAGTAGACAAGCTCAGATCTGAAATCGAACAAATGGAGGTAGTGAAAGAGAGAGGAGATGAATCACTGTATGACCAATTAGAATCGGCTTATGCTACCGATGATGAAGAGATAGAAGCGGCTTATCTTGAGAAATATGACAGAGAGATCGGTGGAAATGATGAACCAAATGATCCTGACAATTTTCATGATCAGGGACCTGAAACGGAAGCTGAACTGCTAATGTAG 2580 42.33 MALLPSRQFHPLTFLDSFQSSFSTFHGSQIYLSRYSASFPLKKHTLYTTQITITSSLVSEQNPIGRSNFFSPSKPISPCNYGRIVCFSNWIDKWNETQKQNRPKTPKAILDSDYQSSDSEQVDSGGSTMERIVEKLKKFGYVKDENNVSKRMKEDEGMVEKGSVEDIFYMEEGILPNSRGGFSKESSLGLEDVFGGNEGGEVRFPWEKRKEKEEEGEGSSARKKGRTSLAELTLPESELRRLRNLTFQKKHKMKIGGSGVTQSAVDTIHEKWKTEEIVRLKIEGPPALNMKRMHEILERKTGGLVVWRSGTTVSLYRGVSYEIPGPKLNKKMYRKTDIFSSSSSPESIDQAAIVPSKLGSYTNNIDTAQVKAEINSEDNREELPEKKYEDEVEQLLNSLGPRYADWPGCDPLPVDADLLSGIVPNYEPPFRILPYGVRSNLGVKEATALRRVARVLPPHFALGRNRQLQGLAVAMSKLWERSSIAKIALKRGVQLTTSERMAEELKKLTGGVLLSRNKDFLVFYRGKNFLSPEVTEALLERERLAKSLQDEEELARLRASALVTPDVINTKHSGIAGSLGETMDADAKWGKNLDDRLKQKVMKEAEITRHADLVRKLDRKLNLAERKLMRAERALSKVEESLKPSKRQADPQSITEEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVKAPSFDQVKNIALALEAESGGVLVSVDKVSKAFAIVLFRGKDYSRPSMLRPKNLLTKRKALARSIELQRHEALLNHISAMQTKVDKLRSEIEQMEVVKERGDESLYDQLESAYATDDEEIEAAYLEKYDREIGGNDEPNDPDNFHDQGPETEAELLM 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1347614 1351033 + Conep04aG0030500.1 Cone4ag0294 435272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0294 859 SUPERFAMILY YhbY-like 654 751 IPR035920 -
Cone4ag0294 859 ProSiteProfiles CRM domain profile. 439 536 IPR001890 GO:0003723(InterPro)
Cone4ag0294 859 MobiDBLite consensus disorder prediction 205 229 - -
Cone4ag0294 859 FunFam CRS2-associated factor 1, chloroplastic 440 536 - -
Cone4ag0294 859 MobiDBLite consensus disorder prediction 98 126 - -
Cone4ag0294 859 Coils Coil 607 641 - -
Cone4ag0294 859 ProSiteProfiles CRM domain profile. 232 328 IPR001890 GO:0003723(InterPro)
Cone4ag0294 859 MobiDBLite consensus disorder prediction 205 224 - -
Cone4ag0294 859 Pfam CRS1 / YhbY (CRM) domain 654 741 IPR001890 GO:0003723(InterPro)
Cone4ag0294 859 Pfam CRS1 / YhbY (CRM) domain 444 525 IPR001890 GO:0003723(InterPro)
Cone4ag0294 859 Pfam CRS1 / YhbY (CRM) domain 234 317 IPR001890 GO:0003723(InterPro)
Cone4ag0294 859 SUPERFAMILY YhbY-like 233 321 IPR035920 -
Cone4ag0294 859 SMART CRS1_YhbY_2 234 317 IPR001890 GO:0003723(InterPro)
Cone4ag0294 859 SMART CRS1_YhbY_2 654 741 IPR001890 GO:0003723(InterPro)
Cone4ag0294 859 SMART CRS1_YhbY_2 441 525 IPR001890 GO:0003723(InterPro)
Cone4ag0294 859 FunFam CRM-domain containing factor CFM3B, chloroplastic 653 755 - -
Cone4ag0294 859 MobiDBLite consensus disorder prediction 831 851 - -
Cone4ag0294 859 Gene3D - 232 333 IPR035920 -
Cone4ag0294 859 Gene3D - 440 536 IPR035920 -
Cone4ag0294 859 Gene3D - 653 754 IPR035920 -
Cone4ag0294 859 SUPERFAMILY YhbY-like 441 533 IPR035920 -
Cone4ag0294 859 FunFam CRS2-associated factor 1, chloroplastic 233 327 - -
Cone4ag0294 859 ProSiteProfiles CRM domain profile. 652 752 IPR001890 GO:0003723(InterPro)
Cone4ag0294 859 Coils Coil 534 554 - -
Cone4ag0294 859 MobiDBLite consensus disorder prediction 831 859 - -
Cone4ag0294 859 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 62 826 IPR045278 GO:0000375(InterPro)|GO:0003729(InterPro)
Cone4ag0294 859 MobiDBLite consensus disorder prediction 98 128 - -
Cone4ag0294 859 Coils Coil 772 799 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0294 K27708 - - mdm:103453330 1117.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0294 Cone-Chr4:1347614 Cone7ag0744 Cone-Chr7:4540877 7.16E-184 dispersed
Cone4ag0294 Cone-Chr4:1347614 Cone11ag0135 Cone-Chr11:604167 4.09E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g611 . . . . . . . . . . . Cma14g01778 . Car14g01599 . . Cpe03g01487 . . . . . . . . . . . . . . . . . Cone4ag0294 Lsi05g01670 . . Cme06g00543 . . . . . . . . . . Cmo14g01815 . . . . . . . . . . . . . Cla05g00486 Cam05g0529 Cec05g0542 Cco05g0542 Clacu05g0528 Cmu05g0500 Cre05g0567 . Csa03g01261 Chy06g00516 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011586 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30