Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0297 ATGACCTCTAGAAACGGTGGTTCCGTCACCGTTGCTCCGCCGCTTGTGCAATCCAAAGCAGCCAAAGCATCGCCTGCCGCAAGAAAAGTCAGGGCCTACCCTCCCTACATTGAGATGGTGAAGGAGGCGATAACCACGCTCAAGGAGAGAACAGGTTCAAGCCAGTACGCAATCACCAAGTTCATCGAGGAGAAGCAGAAGCCTCATCTCCCAACGAATTTTAGAAAGCTATTGCTCGTCCAGCTCAGGAAACTCGTCGCCGTCGGTAAGCTGATCAAGGTCAAGAACTCTTTCAAGCTCCCTGCCAAGTCTCAAGCCAACAATGGCGTCGCCGTACCGGCAAAACCAAAGGCCAAAGCTCCGACAAAGAAAACTTCTGTTGCTAAGCCAAAAACCGCCGTTGTTGCTAAGCCCAAGTCTAAGCTAACCACTAAGCCGACGGTTGTTGCCAAACCTAAGGCGGTGGCTACAAAGAGGAAAGCAACATCTCAGGCTGTTGGTATGCCTTCTAAGGTGCCGAAGATGTCAACTGTCAAATCACCTGGCAAGAAGATAAACGGCCAAAGAGCACTAAAGAAGCCAAAGAGCATTAAGTCTCCGGCCAAAAAAGCCGTGTCAAAGAAGTGA 627 50.4 MTSRNGGSVTVAPPLVQSKAAKASPAARKVRAYPPYIEMVKEAITTLKERTGSSQYAITKFIEEKQKPHLPTNFRKLLLVQLRKLVAVGKLIKVKNSFKLPAKSQANNGVAVPAKPKAKAPTKKTSVAKPKTAVVAKPKSKLTTKPTVVAKPKAVATKRKATSQAVGMPSKVPKMSTVKSPGKKINGQRALKKPKSIKSPAKKAVSKK 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1354880 1356101 + Conep04aG0030800.1 Cone4ag0297 435275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0297 208 SMART h15plus2 30 97 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone4ag0297 208 MobiDBLite consensus disorder prediction 111 208 - -
Cone4ag0297 208 SUPERFAMILY Winged helix DNA-binding domain 31 111 IPR036390 -
Cone4ag0297 208 CDD H15 32 106 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone4ag0297 208 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 32 102 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone4ag0297 208 Gene3D - 29 107 IPR036388 -
Cone4ag0297 208 MobiDBLite consensus disorder prediction 186 208 - -
Cone4ag0297 208 Pfam linker histone H1 and H5 family 34 100 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone4ag0297 208 PANTHER HISTONE H1 21 199 - GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0030261(PANTHER)|GO:0031492(PANTHER)|GO:0045910(PANTHER)
Cone4ag0297 208 PRINTS Histone H5 signature 119 133 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Cone4ag0297 208 PRINTS Histone H5 signature 171 190 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Cone4ag0297 208 PRINTS Histone H5 signature 46 63 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Cone4ag0297 208 PRINTS Histone H5 signature 19 40 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Cone4ag0297 208 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0297 K11275 - - cit:102618662 132.494
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0726 Cone-Chr12:6669601 Cone4ag0297 Cone-Chr4:1354880 4.38E-15 dispersed
Cone17ag0438 Cone-Chr17:2058880 Cone4ag0297 Cone-Chr4:1354880 8.83E-17 dispersed
Cone4ag0297 Cone-Chr4:1354880 Cone8ag0839 Cone-Chr8:8414127 2.92E-18 dispersed
Cone10ag0663 Cone-Chr10:3224599 Cone4ag0297 Cone-Chr4:1354880 4.33E-25 wgd
Cone17ag0598 Cone-Chr17:3195096 Cone4ag0297 Cone-Chr4:1354880 1.04E-26 wgd
Cone20ag0813 Cone-Chr20:5781040 Cone4ag0297 Cone-Chr4:1354880 2.00E-24 wgd
Cone3ag0690 Cone-Chr3:3530305 Cone4ag0297 Cone-Chr4:1354880 1.84E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag0297 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000875 2 2 4 2 3 2 4 2 2 3 2 2 4 3 3 4 2 7 4 2 2 2 3 3 3 2 2 4 4 4 88