Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0300 ATGGGGGAATCTTTCTTCGATTTAGGGGAGTTTCTAAAGAAGCCCTCGATAGCCGAAACATTTGTCGACATTTTGCTATGTGCAGTCCCAATTTGGATGGCCGTGATGATCGGATTGGCGATCGGTTGGTCGTGGAGGCCGCGGTGGACTGGATTGCTCTTACTTGGGCTCCGCGGAAAGTTCCGGTTCCTTTGGACGGCTCCGCTGGGGTTTGGAGCTCGGAGGCTCTGGCTGGCTTTCACCGCGCTCTCAGCCTTCTCGATATGCAGATCGATGTGGTCAAATTTTAGGGAAAGGCGCAAAAACAATTTGGCGCCTATGAATTCGGATTCAACCGCGTCCTCGACCTTGGAACATTCTGACGGAGAAAGCAGCCCAAGCCAAAGAGATGCAGAGATGGAGCAGAGCATTGTTACAGAAAATGATTTAGAACACCTATTACAGCTTCTTGAAGGTAGGAATAGAGAGACGGAATGGCAAAGCCTGATGGATAGGTCTGCCACAAACTTTAGCTACCAAGCTTGGCGCCATGATCCTCAGACGGGCCCCACAATTTACTGCAGTAAAACTGTCTTTGAAGATGCAACTCCAGATCTGGTTAGGGATTTCTTTTGGGATGATGAATTTCGGCCTAAATGGGATCCCATGCTTGTTTATTTCAAGATGTTGGAGGAATGCTCAGATACAGGGACAAGCACTGTTCACTGGATTAAAAAGTTCCCCTTCTTCTGCAGTGATAGAGAATATATCATTGGTCGAAGAATATGGGAGGCAGGGAACACTTACTATTGTGTGACAAAGGGGGTGCCATATCCAGGTTTACCCGAGCGTGAGAAGCCTAGGCGTGTGGCTGGTTACTTCTCGAGCTGGACTATCAAGGCTGTTGAATCCCGTAAAAGAGATGGACAGTTGTCCGCCTGTGAGGTTACCCTTTTACATTACGAAGACATGGGAATTCCAAAAGATGTGGCCAAGCTGGGAGTCCGTCATGGAATGTGGGGGGCTGTGAAGAAGTTGCATGCTGGGTTGAGAGCATATCTGGCTTCTAATTCTATCTCCAGAAGTGCACAGATTGCAAGAATCACCACAAAGCTTTCTTTCAATGGGATCATGGATTCTTCAGATCTACCTGACGAAGAAGGAAATGTTCAAGCCACGGACAAGAAGCAGCAAAAAGATAATGGCGTGGATTGGAAATGGGTTGTTATCGGCGGTACAGTAGCTCTTGTCTTTGGACTTCGCACCGGTGCGATAGGGAAAGTCATTTTACTTGGAGCAGGGAAGAGAATAGCACAAATATGA 1302 47.7 MGESFFDLGEFLKKPSIAETFVDILLCAVPIWMAVMIGLAIGWSWRPRWTGLLLLGLRGKFRFLWTAPLGFGARRLWLAFTALSAFSICRSMWSNFRERRKNNLAPMNSDSTASSTLEHSDGESSPSQRDAEMEQSIVTENDLEHLLQLLEGRNRETEWQSLMDRSATNFSYQAWRHDPQTGPTIYCSKTVFEDATPDLVRDFFWDDEFRPKWDPMLVYFKMLEECSDTGTSTVHWIKKFPFFCSDREYIIGRRIWEAGNTYYCVTKGVPYPGLPEREKPRRVAGYFSSWTIKAVESRKRDGQLSACEVTLLHYEDMGIPKDVAKLGVRHGMWGAVKKLHAGLRAYLASNSISRSAQIARITTKLSFNGIMDSSDLPDEEGNVQATDKKQQKDNGVDWKWVVIGGTVALVFGLRTGAIGKVILLGAGKRIAQI 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1365752 1373404 - Conep04aG0031100.1 Cone4ag0300 435278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0300 433 MobiDBLite consensus disorder prediction 104 134 - -
Cone4ag0300 433 SUPERFAMILY Bet v1-like 140 345 - -
Cone4ag0300 433 CDD START_STARD2_7-like 138 346 - -
Cone4ag0300 433 Gene3D - 133 347 IPR023393 -
Cone4ag0300 433 ProSiteProfiles START domain profile. 155 348 IPR002913 GO:0008289(InterPro)
Cone4ag0300 433 MobiDBLite consensus disorder prediction 104 122 - -
Cone4ag0300 433 FunFam StAR-related lipid transfer protein 7, mitochondrial 136 349 - -
Cone4ag0300 433 Pfam START domain 151 313 IPR002913 GO:0008289(InterPro)
Cone4ag0300 433 PANTHER PHOSPHATIDYLCHOLINE TRANSFER PROTEIN 35 389 IPR051213 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0300 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0300 Cone-Chr4:1365752 Cone8ag0585 Cone-Chr8:4886235 7.20E-112 dispersed
Cone14ag0137 Cone-Chr14:642690 Cone4ag0300 Cone-Chr4:1365752 6.11E-123 wgd
Cone15ag0142 Cone-Chr15:669778 Cone4ag0300 Cone-Chr4:1365752 1.04E-140 wgd
Cone4ag0300 Cone-Chr4:1365752 Cone7ag0299 Cone-Chr7:1292555 8.75E-299 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g618 . . . . . Bpe14g01228 . . . . . Cma14g01781 . Car14g01602 . . Cpe03g01490 . . . . . . . . . . . . . . Cone14ag0137 Cone15ag0142 Cone7ag0299 Cone4ag0300 Lsi05g01674 . . Cme06g00540 . . Bda11g00614 Bda13g00089 . Bpe13g00571 Bma02g00807 . . . Cmo14g01817 . . . . . . . . . . . . . Cla05g00483 Cam05g0526 Cec05g0539 Cco05g0539 Clacu05g0525 Cmu05g0497 Cre05g0564 . Csa03g01258 Chy06g00513 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008740 0 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 2 1 1 1 1 2 1 1 33