Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0307 ATGACCCGACAGTCCTCCTTCTACTCCCGCCCCTTGTTTTCTATTTCGCAACTCGTTTCATCACCCTTTTCCGCTACTCTGGCTAATCCTTGGTGGAACGGTGCCTCCGCCGGGCTACTAGGCATAGACGGGCCCACTCGGCCTAACCACTCTGGATCAGATGACCAAAACGACAGCGTAGAACTAGATCAAGAGACTAGAGACCATGGTGATGGTGCTGTTCATGTCGGCATAACCCGCAGACCAAGAGGCCGACCACCTGGCTCCAAAAACAAACCGAAACAACCAATCGTCGTTGTCCACGACAGCCCCAACGGGCTTCAAAGCCACGTCATGGAGATTTCTAGCGGTGCTGATGTGGTGGAGAGCGTGGCCGAGTTCTCTAGGCGGCGACAGAGAGGTCTTTGCGTGCTTAGCGGAAGCGGTTCAGTCACCAACGTGAGTATAAGACAGCCAACGGTACCGGAGGCTCCTATATTAACATTACAAGGAAGGTTTGAGATCATGAACCTAACTGGGTCGTTTTTGCCGGGTCATGAACTACCCGGATCTAGCGGATTAACGGTTTATTTGACCGGAAGTCATGGCCAGATCGTGGGGGGAAATGTCGTAGGGTCGTTAGTTGCGGTGGGGCCGGTGATGGTTGTTGCGGCGACATTTTCTAATGCCGTGTATGAGAAATTGCCGCTTGACGAACAAGATGATGATCATGGCAGTCGTGGGTCGCGTGGCGGTGTAGAGAACTTGTCACCACCTGAGAAAGGTGGTGGTCATGCTGACGGTGGAGGAGAGCTGCACCCTGCTCATGATCTAGTTCATAATCTTGACCGACCCGTTTATAATCTTCCGCCAAATTTTGTTCCCATCAACGGAGGCGGACTTATAGGGCAAGGTGGATATACCGGCTGGCCTCATCCTCATCCTCATCCTCATCCTCATCCTCATCCTCATCGACCATCTTACTAA 966 52.48 MTRQSSFYSRPLFSISQLVSSPFSATLANPWWNGASAGLLGIDGPTRPNHSGSDDQNDSVELDQETRDHGDGAVHVGITRRPRGRPPGSKNKPKQPIVVVHDSPNGLQSHVMEISSGADVVESVAEFSRRRQRGLCVLSGSGSVTNVSIRQPTVPEAPILTLQGRFEIMNLTGSFLPGHELPGSSGLTVYLTGSHGQIVGGNVVGSLVAVGPVMVVAATFSNAVYEKLPLDEQDDDHGSRGSRGGVENLSPPEKGGGHADGGGELHPAHDLVHNLDRPVYNLPPNFVPINGGGLIGQGGYTGWPHPHPHPHPHPHPHRPSY 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1405303 1406433 - Conep04aG0031900.1 Cone4ag0307 435285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0307 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 233 - -
Cone4ag0307 321 MobiDBLite consensus disorder prediction 54 78 - -
Cone4ag0307 321 ProSiteProfiles PPC domain profile profile. 104 242 IPR005175 -
Cone4ag0307 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 53 305 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone4ag0307 321 MobiDBLite consensus disorder prediction 298 321 - -
Cone4ag0307 321 MobiDBLite consensus disorder prediction 231 269 - -
Cone4ag0307 321 CDD DUF296 110 220 IPR005175 -
Cone4ag0307 321 Gene3D - 108 237 - -
Cone4ag0307 321 MobiDBLite consensus disorder prediction 43 97 - -
Cone4ag0307 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 221 IPR005175 -
Cone4ag0307 321 FunFam AT-hook motif nuclear-localized protein 107 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0307 Cone-Chr4:1405303 Cone5ag0555 Cone-Chr5:2375683 6.02E-77 dispersed
Cone4ag0307 Cone-Chr4:1405303 Cone4ag0308 Cone-Chr4:1410119 4.20E-54 tandem
Cone14ag0141 Cone-Chr14:683830 Cone4ag0307 Cone-Chr4:1405303 6.44E-79 wgd
Cone15ag0149 Cone-Chr15:720428 Cone4ag0307 Cone-Chr4:1405303 1.96E-80 wgd
Cone4ag0307 Cone-Chr4:1405303 Cone7ag0306 Cone-Chr7:1330720 1.85E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0307 - - - 0.0