Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0312 ATGTTACCTAATTTGAAGCGAAAGAGAGGTTGCAACCTTGAATCAACCAAAGATGAGCAAGCTGTTATTGAAGCATCACTAAATAAACATGTTGGTGCTACTGAGGTTTATAACTTGGAGGAAATGGAACCTCCTAGTACACTTACATGTGATTTAAATCCGTACCAGAAACAAGCTCTCTATTGGATGTCTGAACTAGAGAAAGGAGTTGATGTAGAGAAAGCAGCACAAACTCTTCATCCATGCTGGTCTGCTTATCGGATATGTGATGAGAGGGCATCGTCAATTTATCTGAATGTTTTCTCTGGGGAGGCAATTACTTAA 324 39.51 MLPNLKRKRGCNLESTKDEQAVIEASLNKHVGATEVYNLEEMEPPSTLTCDLNPYQKQALYWMSELEKGVDVEKAAQTLHPCWSAYRICDERASSIYLNVFSGEAIT 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1421931 1422426 - Conep04aG0032400.1 Cone4ag0312 435290

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0312 K15505 - - rcu:8276163 167.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0312 Cone-Chr4:1421931 Cone7ag0310 Cone-Chr7:1343583 4.86E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0310 Cone4ag0312 Lsi05g01699 . . Cme06g00516 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00464 Cam05g0505 Cec05g0518 Cco05g0519 Clacu05g0506 Cmu05g0482 Cre05g0546 . Csa03g01237 Chy06g00490 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag1332 . 1 872 RAD5/RAD16-like Gene Family AT1G05120 59.4 3.5e-290 995.0
Cone1ag0142 . 573 1406 RAD5/RAD16-like Gene Family AT1G11100 56.5 1.5e-245 847.0
Cone5ag1012 . 195 946 RAD5/RAD16-like Gene Family AT1G11100 50.1 1.9e-197 687.2
Cone1ag0814 . 94 926 RAD5/RAD16-like Gene Family AT1G50410 54.0 6.4e-239 824.7
Cone5ag1012 . 52 846 RAD5/RAD16-like Gene Family AT1G50410 54.8 6.2e-234 808.1
Cone5ag1724 . 592 1301 RAD5/RAD16-like Gene Family AT1G50410 52.2 2.0e-192 670.2
Cone1ag0142 . 596 1305 RAD5/RAD16-like Gene Family AT1G50410 51.9 1.0e-191 667.9
Cone5ag1724 . 327 1402 RAD5/RAD16-like Gene Family AT1G61140 50.3 8.6e-265 911.0
Cone1ag0142 . 573 1406 RAD5/RAD16-like Gene Family AT1G61140 59.0 1.4e-262 903.7
Cone1ag0814 . 267 1025 RAD5/RAD16-like Gene Family AT1G61140 54.2 2.6e-213 740.0
Cone5ag1012 . 191 945 RAD5/RAD16-like Gene Family AT1G61140 53.2 4.5e-213 739.2
Cone1ag0142 . 609 1307 RAD5/RAD16-like Gene Family AT3G20010 50.5 3.2e-183 639.8
Cone3ag0002 . 72 932 RAD5/RAD16-like Gene Family AT5G05130 66.4 0.0e+00 1103.2
Cone10ag0001 . 56 916 RAD5/RAD16-like Gene Family AT5G05130 65.8 0.0e+00 1095.1
Cone18ag0232 . 1 1027 RAD5/RAD16-like Gene Family AT5G22750 71.1 0.0e+00 1452.2
Cone18ag0232 . 113 1026 RAD5/RAD16-like Gene Family AT5G43530 53.9 3.0e-274 942.6
Cone4ag0312 . 1 105 RAD5/RAD16-like Gene Family AT5G43530 70.1 8.3e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029790 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2