Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0317 ATGTCGCTCATCTCAGATGATGTAGACATGTCTTACGATCTTGAAAAGGAGATTAGAGATTTCGATGAAACAAAAGCTGGTGTCAAGGGTTTAGCCGATTCCGGAATAATCAATCTCCCGAAAATATTCATTCGGCCTAGTCACCTAACCAAGAAATATGACTTGAACAATCAACAACAAATCCAAGTCCCTACCGTAGATCTTACCGGTTTAGAAACTAGTGATCGGCATGAGGAGATTGTTAACGAGATCAGAAACGCATCCGAGAAGTGGGGATTTTTCCAACTAGTTAATCATGGGATTTCCCCAAAATTGTTGGATGATATGATAGAAGGAGCGAAAAGGTTCCACGAGCAAGATGTTGAGTTGAAGAAAGAGTTCTATTCAAGAGATATGTCAAGGAAAGTGATGTTGAGCTCCAACTTTGATTTGTATCGACTTAAAAATGCTGATTGGAGGGACACACTCACCATTTCTTTCAGGGATGGTCGTAACCTTGATCCACTTGACATACCGGCTATCTTGAGAGAGGTAGCACTGGACTACTACAAGCATATGAAACAATTGAGGGATACTCTACTCGGGTTATTATCTGAGGCGCTCGGACTTAGACCAGACTACCTAAAAGCCACGGAATGTGGGGAGGACTGCAGCTTTGTATGTCACTACTACCCAGCCTGCCCTCAGCCTGAACTGACTGTGGGAGCAAGAGAACACTGGGATCCTGACTTCCTGACAATTCTATTACAAGACCAAAGTGGTGGCCTTCAAGTTGCTCATGAGAACCCTCACTTGGCTTATTTCAGGCGTTGA 813 43.54 MSLISDDVDMSYDLEKEIRDFDETKAGVKGLADSGIINLPKIFIRPSHLTKKYDLNNQQQIQVPTVDLTGLETSDRHEEIVNEIRNASEKWGFFQLVNHGISPKLLDDMIEGAKRFHEQDVELKKEFYSRDMSRKVMLSSNFDLYRLKNADWRDTLTISFRDGRNLDPLDIPAILREVALDYYKHMKQLRDTLLGLLSEALGLRPDYLKATECGEDCSFVCHYYPACPQPELTVGAREHWDPDFLTILLQDQSGGLQVAHENPHLAYFRR 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1442966 1443979 + Conep04aG0032900.1 Cone4ag0317 435295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0317 270 Gene3D - 19 265 IPR027443 -
Cone4ag0317 270 Pfam non-haem dioxygenase in morphine synthesis N-terminal 63 161 IPR026992 -
Cone4ag0317 270 SUPERFAMILY Clavaminate synthase-like 25 262 - -
Cone4ag0317 270 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 23 258 - -
Cone4ag0317 270 Pfam 2OG-Fe(II) oxygenase superfamily 216 261 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0317 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0317 Cone-Chr4:1442966 Cone8ag0582 Cone-Chr8:4835565 7.50E-38 dispersed
Cone14ag0144 Cone-Chr14:695160 Cone4ag0317 Cone-Chr4:1442966 5.26E-72 wgd
Cone15ag0152 Cone-Chr15:732318 Cone4ag0317 Cone-Chr4:1442966 1.89E-69 wgd
Cone17ag0608 Cone-Chr17:3330901 Cone4ag0317 Cone-Chr4:1442966 3.63E-78 wgd
Cone20ag0807 Cone-Chr20:5714178 Cone4ag0317 Cone-Chr4:1442966 1.45E-77 wgd
Cone4ag0317 Cone-Chr4:1442966 Cone7ag0313 Cone-Chr7:1362057 5.32E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g660 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag0317 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01227 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222