Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag0319 | ATGGATCCGATTCTTGACGATTCTTGCTGGGACTTCGTCGGCGACGCTTTGATCGACGGCATTGACGAAGGCGGAATTCACTCTCTCGGTTTTTCATGGCCGAGTAATCTCAGTGATGGTGGGGCTAAATTTGATTTCTCCGGCGGCGGGGATACTGTTGCGTCGGAAGAGAAGGAATGTACTCGGAAAAGGGCTCGCACTGAGTCATGCGGTAGACCGGCGTCTAAAGCATGCCGGGAGAAATTGCGAAGAGAAAGATTGAATGATGGGTTTCGAGATTTGAGCATTGCTTTGGAATCTGGTAGACCTACCAAATCGGACAAAGCGGCTATACTCGATGATGTCATCAAAGTTTTAAATCAACTAAGAAATGAAGCTCAGGAGCTCAAAGAGACTAATGAAAAGCTAGTTGAAGAAGTGAAGATTTTAAAGGCAGAGAAAAATGAATTTCGTGAGGAAAAAACAATACTGAAAGCAGACAAAGATAGGGTTGAGCAGCAACTAAAAGCTATGAGCATTCCCTCAAATGGAATTATGGCATCACATGTTCCGAGTGCATATCATCATCATCATTACTTTGCAGGAAACAAGATGGCAGTTTTTCATAGTTATGGTCTGATGCCCATGTGGCAGTATCTACCTCCATCTTCTTGTGATACATCTAATGATCACCAGCTGAGGCCTCCTGCTGCCTAG | 696 | 44.54 | MDPILDDSCWDFVGDALIDGIDEGGIHSLGFSWPSNLSDGGAKFDFSGGGDTVASEEKECTRKRARTESCGRPASKACREKLRRERLNDGFRDLSIALESGRPTKSDKAAILDDVIKVLNQLRNEAQELKETNEKLVEEVKILKAEKNEFREEKTILKADKDRVEQQLKAMSIPSNGIMASHVPSAYHHHHYFAGNKMAVFHSYGLMPMWQYLPPSSCDTSNDHQLRPPAA | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1448078 | 1450142 | - | Conep04aG0033100.1 | Cone4ag0319 | 435297 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag0319 | 231 | SMART | finulus | 77 | 128 | IPR011598 | GO:0046983(InterPro) | |
Cone4ag0319 | 231 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 65 | 136 | IPR036638 | GO:0046983(InterPro) | |
Cone4ag0319 | 231 | Gene3D | - | 72 | 156 | IPR036638 | GO:0046983(InterPro) | |
Cone4ag0319 | 231 | Pfam | Helix-loop-helix DNA-binding domain | 74 | 123 | IPR011598 | GO:0046983(InterPro) | |
Cone4ag0319 | 231 | CDD | bHLH_AtILR3_like | 76 | 151 | - | - | |
Cone4ag0319 | 231 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 71 | 122 | IPR011598 | GO:0046983(InterPro) | |
Cone4ag0319 | 231 | Coils | Coil | 112 | 167 | - | - | |
Cone4ag0319 | 231 | PANTHER | BHLH TRANSCRIPTION FACTOR | 50 | 231 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1399 | Cone-Chr12:10289289 | Cone4ag0319 | Cone-Chr4:1448078 | 6.01E-28 | dispersed | |
Cone14ag1119 | Cone-Chr14:9321339 | Cone4ag0319 | Cone-Chr4:1448078 | 3.03E-32 | dispersed | |
Cone4ag0319 | Cone-Chr4:1448078 | Cone8ag1455 | Cone-Chr8:11228658 | 9.22E-30 | dispersed | |
Cone4ag0319 | Cone-Chr4:1448078 | Cone7ag0314 | Cone-Chr7:1366874 | 3.09E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45912 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag0319 | - | - | - | 0.0 |