Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0319 ATGGATCCGATTCTTGACGATTCTTGCTGGGACTTCGTCGGCGACGCTTTGATCGACGGCATTGACGAAGGCGGAATTCACTCTCTCGGTTTTTCATGGCCGAGTAATCTCAGTGATGGTGGGGCTAAATTTGATTTCTCCGGCGGCGGGGATACTGTTGCGTCGGAAGAGAAGGAATGTACTCGGAAAAGGGCTCGCACTGAGTCATGCGGTAGACCGGCGTCTAAAGCATGCCGGGAGAAATTGCGAAGAGAAAGATTGAATGATGGGTTTCGAGATTTGAGCATTGCTTTGGAATCTGGTAGACCTACCAAATCGGACAAAGCGGCTATACTCGATGATGTCATCAAAGTTTTAAATCAACTAAGAAATGAAGCTCAGGAGCTCAAAGAGACTAATGAAAAGCTAGTTGAAGAAGTGAAGATTTTAAAGGCAGAGAAAAATGAATTTCGTGAGGAAAAAACAATACTGAAAGCAGACAAAGATAGGGTTGAGCAGCAACTAAAAGCTATGAGCATTCCCTCAAATGGAATTATGGCATCACATGTTCCGAGTGCATATCATCATCATCATTACTTTGCAGGAAACAAGATGGCAGTTTTTCATAGTTATGGTCTGATGCCCATGTGGCAGTATCTACCTCCATCTTCTTGTGATACATCTAATGATCACCAGCTGAGGCCTCCTGCTGCCTAG 696 44.54 MDPILDDSCWDFVGDALIDGIDEGGIHSLGFSWPSNLSDGGAKFDFSGGGDTVASEEKECTRKRARTESCGRPASKACREKLRRERLNDGFRDLSIALESGRPTKSDKAAILDDVIKVLNQLRNEAQELKETNEKLVEEVKILKAEKNEFREEKTILKADKDRVEQQLKAMSIPSNGIMASHVPSAYHHHHYFAGNKMAVFHSYGLMPMWQYLPPSSCDTSNDHQLRPPAA 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1448078 1450142 - Conep04aG0033100.1 Cone4ag0319 435297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0319 231 SMART finulus 77 128 IPR011598 GO:0046983(InterPro)
Cone4ag0319 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 136 IPR036638 GO:0046983(InterPro)
Cone4ag0319 231 Gene3D - 72 156 IPR036638 GO:0046983(InterPro)
Cone4ag0319 231 Pfam Helix-loop-helix DNA-binding domain 74 123 IPR011598 GO:0046983(InterPro)
Cone4ag0319 231 CDD bHLH_AtILR3_like 76 151 - -
Cone4ag0319 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 122 IPR011598 GO:0046983(InterPro)
Cone4ag0319 231 Coils Coil 112 167 - -
Cone4ag0319 231 PANTHER BHLH TRANSCRIPTION FACTOR 50 231 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1399 Cone-Chr12:10289289 Cone4ag0319 Cone-Chr4:1448078 6.01E-28 dispersed
Cone14ag1119 Cone-Chr14:9321339 Cone4ag0319 Cone-Chr4:1448078 3.03E-32 dispersed
Cone4ag0319 Cone-Chr4:1448078 Cone8ag1455 Cone-Chr8:11228658 9.22E-30 dispersed
Cone4ag0319 Cone-Chr4:1448078 Cone7ag0314 Cone-Chr7:1366874 3.09E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45912 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0319 - - - 0.0