Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0324 ATGGATTCCTCTGTTTTCGGACACTCTTTCTGCTCTGATTTCTCACCTGAATCTTCTATCGATTCATTTCAATGGAGTGGTCTTGAATTCGATCACTTCGATTCTCTTCCTTTCAATGAAAATGACTCCGAAGAAATGCTCCTCTTTGGACTACTATCCGATACAATTTCCCGTGAATCAAAGGCAGCGTCTGTTTCAGCAAGTCAGGTCAAGGAAGAAGAGGTCGATTCATCGAACTCAATGAACAAGGAAAACCCGACTGAGGAATCGACGATGATGTCGTACAGAGGGGTTCGGAGGCGACCGTGGGGGAAATTCGCGGCGGAGATAAGAGATTCTACAAGACATGGGATTAGAGTTTGGTTAGGCACGTTTGATAGTGCTGAAGCAGCTGCTTTGGCTTATGATCAAGCAGCTTTTTCCATGAGAGGACCCTCCGCTATACTTAATTTTCCGGTGGAGAGAGTGCAGGAATCGCTCGGGGAAATGGGCGGTGGGTTTTCCGATGATGGCGGCTCTCCGGTGGTGGCTTTGAAGAGAAAGCACTCATTGAAAAGGAAAATGGGATGCAAGAAAATGAAAAAGAGTGTGAAGAATGTGGTCGTGTTTGAAGATTTAGGTGCTGACTATTTGGAAGAACTGTTAAGGTTGTCAGAGACAACTAGTTAA 669 45.29 MDSSVFGHSFCSDFSPESSIDSFQWSGLEFDHFDSLPFNENDSEEMLLFGLLSDTISRESKAASVSASQVKEEEVDSSNSMNKENPTEESTMMSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGPSAILNFPVERVQESLGEMGGGFSDDGGSPVVALKRKHSLKRKMGCKKMKKSVKNVVVFEDLGADYLEELLRLSETTS 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1464822 1465490 + Conep04aG0033600.1 Cone4ag0324 435302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0324 222 Gene3D AP2/ERF domain 94 154 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0324 222 PANTHER DNA-BINDING DOMAIN 67 183 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone4ag0324 222 MobiDBLite consensus disorder prediction 63 94 - -
Cone4ag0324 222 CDD AP2 95 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0324 222 SMART rav1_2 94 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0324 222 SUPERFAMILY DNA-binding domain 95 154 IPR016177 GO:0003677(InterPro)
Cone4ag0324 222 FunFam Ethylene-responsive transcription factor 2 93 154 - -
Cone4ag0324 222 Pfam AP2 domain 95 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0324 222 ProSiteProfiles AP2/ERF domain profile. 94 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0324 222 MobiDBLite consensus disorder prediction 63 92 - -
Cone4ag0324 222 PRINTS Ethylene responsive element binding protein signature 134 154 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0324 222 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0157 Cone-Chr15:750525 Cone4ag0324 Cone-Chr4:1464822 1.68E-69 dispersed
Cone3ag0682 Cone-Chr3:3474558 Cone4ag0324 Cone-Chr4:1464822 1.64E-49 dispersed
Cone4ag0324 Cone-Chr4:1464822 Cone7ag0319 Cone-Chr7:1382619 5.98E-137 dispersed
Cone4ag0323 Cone-Chr4:1459183 Cone4ag0324 Cone-Chr4:1464822 1.96E-25 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45915 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0324 K14516 - mdm:103453426 222.246