Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0328 ATGAGCCAGGAATTGAGGTGGAACTACCAAGTTTGCGAAGAGATTGGCCGGGGACGGTTCGGCACTGTTTTCCGGTGCGTCTCTGAAACTTCCGGCGAATCCTACGCTGTCAAGACCATCGACAAGCGCATCGTTTCGGCTGGTGATTCACTCGACGCCCAATGCCTCTTCGCGGAGCCGAAGATCCTCGAGCTTCTCACACCTCATCCTCACATTCTTACTCTACACGATGTGTTCGAAGACGATTCGCATCTTCATATGGTTGTGGATCTGTGCTCTCCTTCCGATCTGCATCACCGAGTCACGCTCGGAGTCTTCACCGAGTCAGAAGCGTCTTCGATCATGTCTCAGCTCATGCATGCTGTGGCTCACTGCCACCGCCATGGAATCGCTCACCGCGATATTAAACCGGATAACATTCTCTTCCAGAGAGATCTCGTGAAGCTAGCCGATTTTGGATCTGCCGAGTTTTTCAGGCCGGGGGAGGAGTCCATGACCGGAGTGGTCGGAACGCCCTATTACGTTGCTCCCGAGGTGCTGTCTGTAAGTAATTACGGGGAAAAGGTCGATGTGTGGAGCGCCGGCGTCGTTTTGTACATAATGTTAGCTGGATTCCCGCCTTTCTTTGGAGAATCGGCGGTGGAGATCTTCCAAGCGGTTCTCAGAGCGAATCTGAGGTTTCCGCCTAGGTTCTTCCAATCTGTATCACCGGCGGCCAAGGATTTGCTTAGGAAAATGCTTTGTAAGGACGTCTCCCGAAGATTCTCTGCCGATCAAGTTCTAAGACACCATTGGATAACAAACTGA 807 52.17 MSQELRWNYQVCEEIGRGRFGTVFRCVSETSGESYAVKTIDKRIVSAGDSLDAQCLFAEPKILELLTPHPHILTLHDVFEDDSHLHMVVDLCSPSDLHHRVTLGVFTESEASSIMSQLMHAVAHCHRHGIAHRDIKPDNILFQRDLVKLADFGSAEFFRPGEESMTGVVGTPYYVAPEVLSVSNYGEKVDVWSAGVVLYIMLAGFPPFFGESAVEIFQAVLRANLRFPPRFFQSVSPAAKDLLRKMLCKDVSRRFSADQVLRHHWITN 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1498130 1499714 - Conep04aG0034000.1 Cone4ag0328 435306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0328 268 CDD STKc_CAMK 8 265 - -
Cone4ag0328 268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0328 268 SMART serkin_6 9 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0328 268 Gene3D Transferase(Phosphotransferase) domain 1 97 268 - -
Cone4ag0328 268 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Cone4ag0328 268 PIRSF ILK 3 263 - -
Cone4ag0328 268 ProSiteProfiles Protein kinase domain profile. 9 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0328 268 SUPERFAMILY Protein kinase-like (PK-like) 7 267 IPR011009 -
Cone4ag0328 268 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524(InterPro)
Cone4ag0328 268 FunFam Maternal embryonic leucine zipper kinase 2 268 - -
Cone4ag0328 268 Pfam Protein kinase domain 9 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0328 268 PANTHER SERINE/THREONINE-PROTEIN KINASE 8 267 IPR050205 GO:0004683(PANTHER)|GO:0005516(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009931(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)|GO:0046777(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0328 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0328 Cone-Chr4:1498130 Cone5ag0553 Cone-Chr5:2362488 5.04E-107 dispersed
Cone20ag0929 Cone-Chr20:6681068 Cone4ag0328 Cone-Chr4:1498130 3.08E-19 transposed
Cone4ag0328 Cone-Chr4:1498130 Cone7ag0322 Cone-Chr7:1402285 1.55E-186 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g702 . . . . . Bpe14g01252 . . . . Cma06g01327 Cma14g01812 Car06g01140 Car14g01625 . Cpe08g00333 Cpe03g01516 . . . . . . . . . . . . . . . . Cone7ag0322 Cone4ag0328 Lsi05g01729 . . Cme06g00496 . Blo07g00261 . Bda13g00065 . . Bma02g00785 . . Cmo06g01331 Cmo14g01850 . . . . . . . . . . . . . Cla05g00447 . . . . . . . Csa03g01212 Chy06g00475 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001788 1 1 1 1 2 1 4 2 1 2 2 2 4 2 2 3 2 3 4 2 2 2 2 1 4 2 2 2 1 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82731 PF14432 DYW_deaminase 2.50E-37 CL0109 Cone PK