Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0340 ATGGCTCCAACCCCTTCTTCCAAATCAAACCATTTGAAAACCCCTCAATCCAATAAACGACTCCATTACCACCCCACAAAAACCAACCAAACCCCAAATCCAAACTCCGCCATCAAAGATCTTCAACAAACAGAGCACCCAGTCGAAGTAATCGGCCGAATCCGAGATTATCCCGACAGAAAAGAGAAACCTGTTTCTGTCTTGCAGATAAACCCTGACACTCAGAAGGTTAGGGTTCGTGCTGACATTGGGTACAGGGATTTCACCCTTGATGGGGTTTCTTTATCTGAAGAAGAAGATATAGATACGTTCTATAAGAAGTTTGTCAAGTTGAGGATTGATGGGGTTAGGTCTTTGAAAGATATTTTGGGAGAAGACGAAGATAAAGGAGATCAGGAAAGTATTGGGTTGAGAGTTGGGATGTTTGTTCAGGTTACTGTGTTAGAGATTTATAATGAGGAAATATATGATCTTCTGTCAAGCAATGGAGGTGGAGGAGGAGGAGGATTAGGGCTTGGTTGGTCTAAGGGCAGTGCTTCCAAGGTGAAGCTGAAAGTGATGGGAAAGAAGGCAAAGAATGCGACCTACATATCTGGAAATGAAGCCGGGAAGATATCTAAAGAGATTCAGAAAGTAGAGAAGCGAAGGATTGTTAGGAGCACACTTTGTAATGAAAGAAGCTCTAGAAGCCACTGCATGATTATACTTGATGTCCCAACCATTGGAGGTCGATTGATGCTTGTGGACATGGCTGGTTCTGAAAACATCGATCAAGCTGGTCAAGTTGGATTTGAGGCAAAAATGCAGACAGGAAAGATCAACCAGGGCAATATAGCGTTGAAAAGAGTGGTCGAATCAATTGCTAATGCTGATTCTCATGTTCCCTTTAGAGACAGCAAACTGACTATGCTTCTGCAGGATTCGTTTGAGGATGATAAGTCCAAGATTTTGATGATACTGTGTGCAAGTCCAGATCTGAAAGAGATACACAAGACCATATCTACTCTTGAATATGGCGCCAAAGCAAAACGTATAGTCCGTGGCCCTCATACTCCGATTAAGGATAAAAATGGAGCTTAA 1080 42.5 MAPTPSSKSNHLKTPQSNKRLHYHPTKTNQTPNPNSAIKDLQQTEHPVEVIGRIRDYPDRKEKPVSVLQINPDTQKVRVRADIGYRDFTLDGVSLSEEEDIDTFYKKFVKLRIDGVRSLKDILGEDEDKGDQESIGLRVGMFVQVTVLEIYNEEIYDLLSSNGGGGGGGLGLGWSKGSASKVKLKVMGKKAKNATYISGNEAGKISKEIQKVEKRRIVRSTLCNERSSRSHCMIILDVPTIGGRLMLVDMAGSENIDQAGQVGFEAKMQTGKINQGNIALKRVVESIANADSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDLKEIHKTISTLEYGAKAKRIVRGPHTPIKDKNGA 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1565034 1566716 - Conep04aG0035200.1 Cone4ag0340 435318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0340 359 PRINTS Kinesin heavy chain signature 221 238 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag0340 359 PRINTS Kinesin heavy chain signature 294 315 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag0340 359 PRINTS Kinesin heavy chain signature 244 262 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag0340 359 MobiDBLite consensus disorder prediction 21 42 - -
Cone4ag0340 359 ProSiteProfiles Kinesin motor domain profile. 1 345 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag0340 359 PANTHER KINESIN-RELATED 117 352 IPR027640 GO:0003777(InterPro)|GO:0003777(PANTHER)|GO:0005871(PANTHER)|GO:0005874(PANTHER)|GO:0007018(InterPro)|GO:0007018(PANTHER)|GO:0008017(PANTHER)|GO:0016887(PANTHER)
Cone4ag0340 359 Gene3D Kinesin motor domain 115 348 IPR036961 -
Cone4ag0340 359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 345 IPR027417 -
Cone4ag0340 359 MobiDBLite consensus disorder prediction 1 45 - -
Cone4ag0340 359 SMART kinesin_4 45 353 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag0340 359 Pfam Kinesin motor domain 138 345 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0340 K10398 - - csv:101206310 540.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0161 Cone-Chr14:775053 Cone4ag0340 Cone-Chr4:1565034 2.42E-178 dispersed
Cone15ag0172 Cone-Chr15:827359 Cone4ag0340 Cone-Chr4:1565034 1.42E-177 dispersed
Cone4ag0340 Cone-Chr4:1565034 Cone11ag1206 Cone-Chr11:9107183 2.90E-23 dispersed
Cone4ag0340 Cone-Chr4:1565034 Cone7ag0333 Cone-Chr7:1453998 8.18E-218 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g735 . . . . . Bpe14g01265 . . Cmo08g01050 Cmo17g00152 . . . . . . . . . . . . . . . . . . . . . Cone14ag0161 Cone15ag0172 . Cone4ag0340 . Csa02g01048 . . Blo02g00696 . . Bda13g00053 . . . . Sed09g0662 . . Cma08g01075 Cma17g00153 Car08g00947 Car17g00135 Cpe12g00130 Cpe17g00203 Bhi12g01600 Tan06g2394 Cmetu05g0124 . . . Lcy13g0389 . . . . . . . . . . Cme05g00583
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006035 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 2 1 1 39