Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0344 ATGGTGAAGTTCTCAAAAGAGCTTGAAGCTCAGCTAATACCAGAATGGAAAGAGAAATTTGTGAACTACTGGCAATTGAAGAAACATGTCAAAAAGATCAAGCTTGCCAGAGTACCTAAACAATCCTCACTAATAAGCTCGGATGGGGCTGATTTTGGCCGGTCCGTTTTTGATCCGATTTGCTCCATTGCTAAAAGGATCTCCAACAAGTTCTTCAATCGTCCTACTAACATCATCGCATCCGGGATTATTCAGGTGAAGAGTACTAAAAGTATGGAGGATAGTGAAGAAGACATGGAGGTTTACGAAACTGAGCTTTCTCAGTTGTTTTCCGACGAAAACGAGGTAAGGGTTTTCTTCGAGAGATTGGATGAAGAGTTAAACAAAGTGAACCAGTTTTACAAATCTAGAGAGAAGGAGTTCATAGAGAGAGGAGAGATTATAAGCAAGCAGCTCCAGATTCTGCTTGATCTCAACCGTATCTTACAAGACCGCCGCTGCAAAAATTTTCCGTCCAGGACCAGTTCTGGAATCGTGCCTCGATCTTGGTCGTCTTCTCCTCGTAACTCTGATTTCTCAGATCAGGGGAGTGATCAAGTGAAGGAAGGGACAGGGGAACTGGCGACGGAGACGGATGAAGCAATAGCGGCGTTAGAGAGAAACGGCGTGAGTTTTATAAACGCGGCGAGTAGGGGAAAGACGAAGAAAGGTAAGCCTAAGATGGCGCTCAGAGTGGACGTTCCCACGAGTACGCCAACAGCTGCTACTCGCTCAATCTCGGCCGTTACTTCCATGCTATGGGAGGATCTGATTAACAATTCGAAAAAGGAGGTTAACGGGTCTGGGCCGGGTGATTTTATAAACCGGAAGAAGATCCAGTGCGCTGAGAAAATGATTAGAGGCGCCTTTGTTGAGCTCTACAGAGGCCTCGGTCTTCTTAAAACCTACAGCTCCCTTAACATGTTGGCATTTGTTAAGATACTCAAGAAGTTTGATAAGGTATCTAACCAGCAAGCTTCTGGAATTTATTTAAACATGGTGAAGAGATCTCACTTTATTAGTTCTGATAAGGTGGTTCGACTAATGGACGAAGTGGAGTCCATATTCACCAAGCACTTCGCCAGCAACGACAGGAAAAAAGCCATGAAATACTTGAAACCGCAACAACAAAAAGATTCTCACGTCATCACTTTCTTTGTTGGATTATTTACAGGTAGTTTTGTATCATTGTTTACTGTATACGCAACGTTAGCCCACTTTTCCGGTATATTTTCGCTCGGTGTAGACACTGCTACTTATATGAATACCGTCTATCCTGTTTTCAGTATGTTTGCACTGCTAAGCTTGCACATATTTATGTACGGGTGCAACCTGTTCATGTGGAAATATTCAAGGATTAATTACAATTTCATATTCGAATTTCAATCGAGCACGGCTTTGAAATACCGCGATGCGTTTCTGATATGCACCACCTTCATGACTGCTGTGGTTGGTGCTTTAGTCATTCACCTCATTTTAATAGCCACCGGCTTTTCTCGGTCCCATGTCGATGCCATTCCCGGCATTCTTCTTTTGATGTTTTTTGTCATCCTCGTATGTCCGATCGACGTCTTCTATCGTTCGACCCGCTTTTGCTTTATCAAGATCATCCGCAACATTGTTTTCTCTCCCTTTTACAAGGTTTTGATGGTTGACTTTTTTATGGCTGACCAACTTACTAGCCAGATCCCCTTGCTACGGCACATGGAATCTACGGCTTTCTACTTCTTTGCCGGAAGTTTCAAATCCCGCAGATTTCTACGGGAACTCTCATATGTTATCTCATTTTTGCCTTATTACTGGCGTGCTATGCAGTGTGCAAGAAGATGGTTTGATGACGGTGATCTGAATCATTTGGCTAACATGGGCAAGTATGTCTCGGCCATGATAGCAGCCGGGGCTAGGATCACCTATTTCAAGCAGCCCAACAACTTCTGGTTCGCTACAGTTCTGGTCACCTCGTTTTCCGCTACGATTTATCAGTTGTACTGGGATTTCGTTAAGGACTGGGGCCTACTGAAACCGAAATCCAAGAACCCGTGGCTCAGGGACGAACTTGTTCTAAAAAGGAAAGGCATCTATTACATGTCCATTGCCTTGAATTTGGTCCTTAGAGTTGCGTGGGTCGAGGCTATTTTGCGGTTGAGTGTTAGTGATTTCGACTACAAGTTGTTGGATTTTTTGTTGGCTTCATTGGAGGTTATACGACGAGGCCACTGGAACTTCTACAGGATCGAGAATGAGCATCTAAACAATGTTGGAAAGTACAGGGCAGTTAAGACAGTGCCATTGCCGTTCCGTGAGACAGACTCTGATGGGTAA 2361 44.01 MVKFSKELEAQLIPEWKEKFVNYWQLKKHVKKIKLARVPKQSSLISSDGADFGRSVFDPICSIAKRISNKFFNRPTNIIASGIIQVKSTKSMEDSEEDMEVYETELSQLFSDENEVRVFFERLDEELNKVNQFYKSREKEFIERGEIISKQLQILLDLNRILQDRRCKNFPSRTSSGIVPRSWSSSPRNSDFSDQGSDQVKEGTGELATETDEAIAALERNGVSFINAASRGKTKKGKPKMALRVDVPTSTPTAATRSISAVTSMLWEDLINNSKKEVNGSGPGDFINRKKIQCAEKMIRGAFVELYRGLGLLKTYSSLNMLAFVKILKKFDKVSNQQASGIYLNMVKRSHFISSDKVVRLMDEVESIFTKHFASNDRKKAMKYLKPQQQKDSHVITFFVGLFTGSFVSLFTVYATLAHFSGIFSLGVDTATYMNTVYPVFSMFALLSLHIFMYGCNLFMWKYSRINYNFIFEFQSSTALKYRDAFLICTTFMTAVVGALVIHLILIATGFSRSHVDAIPGILLLMFFVILVCPIDVFYRSTRFCFIKIIRNIVFSPFYKVLMVDFFMADQLTSQIPLLRHMESTAFYFFAGSFKSRRFLRELSYVISFLPYYWRAMQCARRWFDDGDLNHLANMGKYVSAMIAAGARITYFKQPNNFWFATVLVTSFSATIYQLYWDFVKDWGLLKPKSKNPWLRDELVLKRKGIYYMSIALNLVLRVAWVEAILRLSVSDFDYKLLDFLLASLEVIRRGHWNFYRIENEHLNNVGKYRAVKTVPLPFRETDSDG 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1576787 1581477 - Conep04aG0035600.1 Cone4ag0344 435322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0344 786 MobiDBLite consensus disorder prediction 172 208 - -
Cone4ag0344 786 Coils Coil 92 112 - -
Cone4ag0344 786 CDD SPX_PHO1_like 3 340 IPR034092 -
Cone4ag0344 786 PANTHER SPX DOMAIN-CONTAINING PROTEIN 1 785 IPR052486 -
Cone4ag0344 786 MobiDBLite consensus disorder prediction 172 204 - -
Cone4ag0344 786 ProSiteProfiles EXS domain profile. 595 786 IPR004342 GO:0016020(InterPro)
Cone4ag0344 786 Pfam EXS family 438 763 IPR004342 GO:0016020(InterPro)
Cone4ag0344 786 ProSiteProfiles SPX domain profile. 2 345 IPR004331 -
Cone4ag0344 786 MobiDBLite consensus disorder prediction 229 249 - -
Cone4ag0344 786 Pfam SPX domain 2 347 IPR004331 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0344 K24195 - - mdm:103412500 1140.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1395 Cone-Chr12:10272593 Cone4ag0344 Cone-Chr4:1576787 1.19E-27 dispersed
Cone13ag0869 Cone-Chr13:7748105 Cone4ag0344 Cone-Chr4:1576787 4.45E-253 dispersed
Cone19ag0870 Cone-Chr19:6817557 Cone4ag0344 Cone-Chr4:1576787 1.36E-243 dispersed
Cone4ag0344 Cone-Chr4:1576787 Cone6ag0482 Cone-Chr6:2405094 3.46E-259 dispersed
Cone14ag0163 Cone-Chr14:781217 Cone4ag0344 Cone-Chr4:1576787 1.61E-279 wgd
Cone15ag0173 Cone-Chr15:833642 Cone4ag0344 Cone-Chr4:1576787 3.19E-281 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g741 . . . . . Bpe14g01269 . . . . Cma06g01309 Cma14g01826 Car06g01123 Car14g01638 . Cpe08g00346 Cpe03g01529 Bhi01g00707 . . . Hepe05g1672 . . . . . . . . . Cone14ag0163 Cone15ag0173 . Cone4ag0344 Lsi05g01749 . . Cme06g00473 Blo02g00759 Blo07g00275 Bda11g00642 . . Bpe13g00545 Bma02g00764 Bma06g01609 . Cmo06g01316 Cmo14g01867 . . . . . . . . . . . . . Cla05g00429 Cam05g0467 Cec05g0476 Cco05g0476 Clacu05g0464 Cmu05g0443 Cre05g0504 . Csa03g01191 Chy06g00455 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005316 1 1 2 3 2 1 2 1 1 1 1 1 2 1 0 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40