Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0351 ATGGCGGATGTAACTCATCGGCTCCAAGCCGTGAAACAACAGTCTGGAAAATCATACAGTGAGATAGCACAAGAGACTGGCCTCACCAACGTCTATGTAGCTCAGCTGCTTAGACGTCAAGCTCAGCTCAAGCCGGAGACCGCCCCTAAACTCATCGCCGCTCTTCCTTCCCTCACCGATGGCCTCGTCCAAGAGATGTCGAAGCCTCCGTTCAGATCTTACGACCCTAATGTGATCCAAGAACCTACCATTTACAGGTTGAATGAAGCTGTTATGCATTTCGGAGAGAGCATCAAGGAAATCATCAACGAGGAGTTTGGTGATGGCATAATGTCTGCCATTGACTTTTACTGCTCCGTTGACAAAGTGAAAGGTGTTGACGGAAAGGACCGTGTAGTTCTCACATTTGACGGCAAGTATCTGCCTCACACTGAGCAGAAGGTCGAGCATATGGTTTCCAAACTGAGTTTGCAGGGGAAGTAA 483 48.65 MADVTHRLQAVKQQSGKSYSEIAQETGLTNVYVAQLLRRQAQLKPETAPKLIAALPSLTDGLVQEMSKPPFRSYDPNVIQEPTIYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSVDKVKGVDGKDRVVLTFDGKYLPHTEQKVEHMVSKLSLQGK 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1606985 1608049 - Conep04aG0036300.1 Cone4ag0351 435329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0351 160 SUPERFAMILY Cyanase C-terminal domain 80 145 IPR036581 GO:0009439(InterPro)
Cone4ag0351 160 FunFam Cyanate hydratase 80 146 - -
Cone4ag0351 160 NCBIfam cyanase 4 143 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cone4ag0351 160 PRINTS Cyanase signature 12 27 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cone4ag0351 160 PRINTS Cyanase signature 32 49 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cone4ag0351 160 PRINTS Cyanase signature 131 141 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cone4ag0351 160 PRINTS Cyanase signature 81 95 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cone4ag0351 160 PRINTS Cyanase signature 99 115 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cone4ag0351 160 SUPERFAMILY lambda repressor-like DNA-binding domains 3 76 IPR010982 GO:0003677(InterPro)
Cone4ag0351 160 Hamap Cyanate hydratase [cynS]. 1 160 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cone4ag0351 160 PANTHER CYANATE HYDRATASE 2 156 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cone4ag0351 160 CDD Cyanase_C 78 146 IPR003712 GO:0009439(InterPro)
Cone4ag0351 160 Gene3D - 80 146 IPR036581 GO:0009439(InterPro)
Cone4ag0351 160 Pfam Cyanate lyase C-terminal domain 77 144 IPR003712 GO:0009439(InterPro)
Cone4ag0351 160 Gene3D - 1 77 IPR010982 GO:0003677(InterPro)
Cone4ag0351 160 SMART Cyanate_lyase_2 73 146 IPR003712 GO:0009439(InterPro)
Cone4ag0351 160 PIRSF Cyanate_hydratas 1 146 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0351 K01725 - - mdm:103430865 259.996
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g753 . . . . . . . . . . . Cma14g01831 . Car14g01642 Sed12g0452 . Cpe03g01534 Bhi01g00696 Tan10g0654 Cmetu06g1756 . Hepe05g1678 . . . . . . . . . . . . Cone4ag0351 Lsi05g01753 . . . . Blo07g00277 . . . . . Bma06g01611 . . Cmo14g01872 . . . . . . . . . . . . . . . . . . . . . Csa03g01186 Chy06g00450 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013973 0 1 1 1 0 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 24