Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0355 ATGGATTCGGATCAGGGAAAGCTTTTCATTGGCGGAATTTCATGGGAGACCTCAGAGGATAAGCTCAAGGACTACTTCGGCAACTATGGCGAGGTGGCGCAGACCGTCGTTATGAGAGACAAGACGACAGGGAGACCTAGAGGGTTTGGCTTCGTCGTTTTCGAAGATCCCTCGGTTCTCGATAGGGTTCTTCAGGATAAGCACACAATCGACGGTAGACTGGTTGAGGCTAAGAGGGCCTTATCTCGGGAAGAACAGCAAACCTCAGCCAGATCCGGAAATACTAATCCTGGTAGAAATTTTGGTGGTGGTGGTGGCGGAGGAAATATCAGAACGAAGAAAATCTTTGTTGGAGGATTGCCCCCAACTTTGAATGAAGACGGTTTTAAGCAGTATTTTGAAATATTTGGTGATGTAGCAGATGTTGTAGTTATGTATGACCAAAATACCGGACGGCCTCGTGGATTTGGCTTTATTTCATTCGAATCCGAAGAAGCAGTGGATCGGGTTTTGCAGAAGACGTTCCATGATTTAAATGGTAAGCAAGTGGAAGTGAAGAGAGCTCTTCCGAAAGATTCTAATCCTGGTGGTGGAGGTGGTGGCCGTTCAACGGGTGGCGGTGCTGGAAGTGGCGGTGGTTTCCCAGGCTATGGGATTTCTGGTGGCAATCCTAACTCATATGATGGCCGGCTAGATTCCAGTAGATACATGCAATCTCAGGGTACAGGTGAAGGTTTTCCGCCTTATGGTTCTTCTGGCTATTCTACTTCTGGCTATGGGTATGGCCCTTCAAATAATGGGATTGGTTATGGTGGCTATTATGGTGGGGCCAATACTGGATATGGTGCCGCTGCCGCTGCTGCTGCTGCAGCCACATCCTATGGAAACCCAAATGTCCCTAATGCTGGCTATGCAAGTGGTCCACAAGGTGGCCCCCAAACTTCGTGGAGCACTCAAGGTCCGACAGGTTATGGGGCTGTGGGCTATGGGAATACTGCTCCTTGGGCTACTCCTAATGGTAGTAGTGGTGGTGGTGGTGGATCCGTACCTACCGGTCAATCTCCTGGTGGTGCCGGTGGGTATGGAAACCAAGGTTATGGGTATGGTGGGTATGGTGGGAACGATGGTTCTTATGGGAATCCAGGTGGGTACGGAGTTGTTGGAGGGCGGTCTGGTGGTGGGGCCCCAAATAGTAATATGGGTGGTCAAGGCAGTGGAGAATTACATGCCAATGGAGGTGGCTACATAGGAAGTGGTTATGGTGATGCAAATGGGAATTCTGGCTATGGAAATGAGGCATGGAGATCTGATTCATCACAAGCCTCAGGAAATTATGGGACCACCCCTCAGGGCAATGGTCTTCGTGGAGGGCAAGTAGGTTATGGTGGTGGATACGGAGGTGGTCAGGTCCGACAACCTCAGCAACAGTAA 1431 50.03 MDSDQGKLFIGGISWETSEDKLKDYFGNYGEVAQTVVMRDKTTGRPRGFGFVVFEDPSVLDRVLQDKHTIDGRLVEAKRALSREEQQTSARSGNTNPGRNFGGGGGGGNIRTKKIFVGGLPPTLNEDGFKQYFEIFGDVADVVVMYDQNTGRPRGFGFISFESEEAVDRVLQKTFHDLNGKQVEVKRALPKDSNPGGGGGGRSTGGGAGSGGGFPGYGISGGNPNSYDGRLDSSRYMQSQGTGEGFPPYGSSGYSTSGYGYGPSNNGIGYGGYYGGANTGYGAAAAAAAAATSYGNPNVPNAGYASGPQGGPQTSWSTQGPTGYGAVGYGNTAPWATPNGSSGGGGGSVPTGQSPGGAGGYGNQGYGYGGYGGNDGSYGNPGGYGVVGGRSGGGAPNSNMGGQGSGELHANGGGYIGSGYGDANGNSGYGNEAWRSDSSQASGNYGTTPQGNGLRGGQVGYGGGYGGGQVRQPQQQ 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1623389 1626390 - Conep04aG0036700.1 Cone4ag0355 435333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0355 476 MobiDBLite consensus disorder prediction 182 249 - -
Cone4ag0355 476 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Cone4ag0355 476 FunFam heterogeneous nuclear ribonucleoprotein 1 108 230 - -
Cone4ag0355 476 MobiDBLite consensus disorder prediction 304 323 - -
Cone4ag0355 476 SUPERFAMILY RNA-binding domain, RBD 112 218 IPR035979 GO:0003676(InterPro)
Cone4ag0355 476 SUPERFAMILY RNA-binding domain, RBD 3 108 IPR035979 GO:0003676(InterPro)
Cone4ag0355 476 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 474 IPR053260 -
Cone4ag0355 476 MobiDBLite consensus disorder prediction 335 358 - -
Cone4ag0355 476 Pfam RNA recognition motif 8 74 IPR000504 GO:0003723(InterPro)
Cone4ag0355 476 Pfam RNA recognition motif 115 181 IPR000504 GO:0003723(InterPro)
Cone4ag0355 476 Gene3D - 1 110 IPR012677 -
Cone4ag0355 476 Gene3D - 111 223 IPR012677 -
Cone4ag0355 476 MobiDBLite consensus disorder prediction 78 107 - -
Cone4ag0355 476 CDD RRM2_Hrp1p 114 191 - -
Cone4ag0355 476 MobiDBLite consensus disorder prediction 335 349 - -
Cone4ag0355 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723(InterPro)
Cone4ag0355 476 MobiDBLite consensus disorder prediction 429 454 - -
Cone4ag0355 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Cone4ag0355 476 MobiDBLite consensus disorder prediction 226 249 - -
Cone4ag0355 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723(InterPro)
Cone4ag0355 476 MobiDBLite consensus disorder prediction 424 476 - -
Cone4ag0355 476 SMART rrm1_1 114 186 IPR000504 GO:0003723(InterPro)
Cone4ag0355 476 SMART rrm1_1 7 78 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0355 K14411 - - cit:102607686 483.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0355 Cone-Chr4:1623389 Cone6ag0030 Cone-Chr6:185853 1.86E-76 dispersed
Cone9ag1021 Cone-Chr9:5386373 Cone4ag0355 Cone-Chr4:1623389 4.89E-07 dispersed
Cone18ag0801 Cone-Chr18:4720542 Cone4ag0355 Cone-Chr4:1623389 2.08E-120 wgd
Cone20ag0774 Cone-Chr20:5449474 Cone4ag0355 Cone-Chr4:1623389 3.84E-118 wgd
Cone4ag0355 Cone-Chr4:1623389 Cone7ag0342 Cone-Chr7:1492843 5.13E-228 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g762 Blo01g00299 Blo12g00140 Bda03g01091 . Bpe04g00987 . Bma04g01016 Bma05g01250 Cmo08g01037 Cmo17g00147 . . . . . . . . . . . . . . Cla06g00688 Cam06g0739 Cec06g0746 Cco06g0757 Clacu06g0730 Cmu06g0714 Cre06g1489 . . Cone7ag0342 Cone4ag0355 . Csa02g01037 Chy05g00300 . . . . . Bpe05g01104 . . . Sed09g0643 . . Cma08g01068 Cma17g00148 Car08g00943 Car17g00130 Cpe12g00125 Cpe17g00209 Bhi12g01574 Tan06g2380 Cmetu05g0543 Lac12g2130 Hepe03g0304 . Lcy13g0400 . . . . . . . Lsi09g01204 . . Cme05g00604
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001187 1 2 4 4 3 1 4 1 3 2 1 2 4 2 2 4 2 6 3 1 2 2 2 2 2 2 2 4 4 2 76