Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag0359 | ATGGCAGACGAGGTACCGATCGAAGATGTTGCTGTGGCGGCGGCGGCGGTGACGGTGGAGACAGGGGAGACCAAGCAGGAATCACACAAGCTGGAGAGAAAGTGGACATTTTGGCTCGACAATCGTAAGCAGAAGCAAGGTGCTGCTTGGGGCTCGTCTCTTCGCAAGGTCTACACCTTCGATACCGTCGAGGAATTTTGGTGTTTGTATGAACAGGAATTCAAGCCGAGCAAGTTTCCTGGGAAAGCTGATTTCCACTTGTTCAGAGCTGGAGTTGAACCCAAGTGGGAAGATCCTGAGTGTGCGAATGGAGGTAAGTGGACTGTTACCAGCAGCAGAAAGGCTAACCTTGACACCATGTGGCTCGAAACTATGATGTCTTTGATCGGTGAGCAATTTGACGAGACCGATGAGATCTGCGGTGTGGTTGCAAGTGTGAGACAAAGGCAGGATAAGGTTGCTTTATGGACCAAGACAGCAGCAAATGAAGCTGTTCAGATGGGGATTGGGAGGAAGTGGAAGGAGATAATTGATGTCACTGACAAGATCACTTACAGCTTCCATGATGATTCGAAAAGGGAGGGATCGGCTAGAAGTCGCTACAACTTGTGA | 612 | 49.84 | MADEVPIEDVAVAAAAVTVETGETKQESHKLERKWTFWLDNRKQKQGAAWGSSLRKVYTFDTVEEFWCLYEQEFKPSKFPGKADFHLFRAGVEPKWEDPECANGGKWTVTSSRKANLDTMWLETMMSLIGEQFDETDEICGVVASVRQRQDKVALWTKTAANEAVQMGIGRKWKEIIDVTDKITYSFHDDSKREGSARSRYNL | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1630709 | 1633969 | - | Conep04aG0037100.1 | Cone4ag0359 | 435337 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag0359 | 203 | FunFam | Eukaryotic translation initiation factor 4E | 20 | 203 | - | - | |
| Cone4ag0359 | 203 | Pfam | Eukaryotic initiation factor 4E | 30 | 184 | IPR001040 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cone4ag0359 | 203 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED | 22 | 194 | IPR001040 | GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0006413(InterPro)|GO:0016281(PANTHER) | |
| Cone4ag0359 | 203 | ProSitePatterns | Eukaryotic initiation factor 4E signature. | 84 | 107 | IPR019770 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro) | |
| Cone4ag0359 | 203 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 8 | 199 | IPR023398 | - | |
| Cone4ag0359 | 203 | SUPERFAMILY | eIF4e-like | 24 | 197 | IPR023398 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone4ag0359 | Cone-Chr4:1630709 | Cone6ag0928 | Cone-Chr6:4749111 | 1.86E-64 | dispersed | |
| Cone14ag0175 | Cone-Chr14:814931 | Cone4ag0359 | Cone-Chr4:1630709 | 4.05E-117 | wgd | |
| Cone15ag0183 | Cone-Chr15:874156 | Cone4ag0359 | Cone-Chr4:1630709 | 3.28E-112 | wgd | |
| Cone4ag0359 | Cone-Chr4:1630709 | Cone7ag0345 | Cone-Chr7:1505292 | 3.83E-131 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag0359 | K03259 | - | csv:101208495 | 323.168 |