Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0368 ATGCGCGCTAAACTCCATCTTCCCCTAAAAATTCTGACTTTCTGTTCACACAAGATGGGCTCTACTATCCCGGTCCTAGACCTCAATCTCCTCCCTGACCCAGCCGCCTCCGTCGAGAACAACAACAACATCTACAGTTTCAAAATCCCTAAAATTGAGCCTAAGCACGAACCATTCGACGAAGCACCGTTGGAAACCTCTCAACCACCTCAACAACCGCAGCAACTCCTACAATCCTTCTTGCCGGACCCTTCACCGAACATTTTCTCCCATTCACCAGTCACTCCTCCTCCCCTCCCCGAACAAAACCCTAACTCCTTCTCTCAACCTTCAAATATCTTCTCCTCAGACGTTGACAATGTCCACTCCGAATTCAACCGCATTTCCGAGCTCTTCAATACCGCTTTTCCCAAGAGGCTAGATAACTACGAATGTGAGGCGGAATTAGATCCCGAATCTGGAGCAATCGTCCCAGTCCCGCCGGAAAATCAGGTATCGACTACAGTCGTAGCAAGGAGGAAATACCCGAAGCGATCGTCAGAGCTGGTCAGAGTAACCGATCTCAGCGTTGACGATCACAGATACTTCCGAGATGTAGTGAGACGCACTAGAATGATCTTCGATTCTCTTCGCATTTTAACCCTAGTGGAAGTAGAGAAACGCCGCGATTCAGGTCTCTCTAGAAGGCTCAGAGGCGACTTGGTAGCTTCCTCTGTTTTAAGAGAACGTGGACTCTGGCTAAATCGTGATAAACGGATTGTGGGTTCGATTCCGGGGGTGTATATAGGAGATTTGTTCCTTTTTAGAATGGAACTATGTGTAGTTGGGCTTCACGGTCAGACTCAAGCTGGAATCGACTATGTTCCGGCTAGTCAGAGCTCAAATGGAGAGCCTATTGCTACGAGCATAATAGTTTCAGGTGGATATGAAGATGATGATGATGCAGGGGATGTGTTAATCTATACGGGTCATGGTGGGCAAGATAAGTTTTCATCAAAGCAATCTACTCACCAGAAGCTAGAAGGTGGGAATCTAGCTTTGGAGAGAAGTATGCATTATCAGATTGAAGTGAGGGTTATTAGGGGGATTAAGCACCCAGGTAGTTTTACTAACAAAGTTTATGTTTATGATGGTTTATACCGGATTCTTGACTGTTGGTTTGATGTGGGCAAGTCCGGTTTTGGTGTTTACAAGTACAAGCTGGTCAGGACTGGGGGTCAACCTGAAATGGGTAGTACTGTTTTGAAATTTGCAGAGAGTCTTAGAACAAACCCTATGTCTGTAAGGCCAATGGGATATCTCAGTCTTGATATTTCAGTGAAGAAGGAGAACATTCCGGTCCTTCTTTTTAACGATATTGATAATGATCAGGAGCCATTGTTTTATGACTATCTTCTTAGGACTGTTTTTCCGCCTTTTGCCTTTCACCAATCAGGCAATGGTACTGGTTGTGACTGTGTTTCTGGTTGTGTTGATGATTGCTTTTGTGCTATTAAGAATGGGGGAGAGTTTGCTTATGATCATAATGGATTTCTTGTCAGAGGGAAACCTGTAGTTTTCGAATGTGGGCCCTTCTGTCAATGCCCCCCACAATGCCGGAATCGGGTTTCACAAAAAGGTATAAAACATAGGCTTGAAGTGTTTAGGTCAAGAGAAACAGGATGGGGTGTTAGGTCCTTAGACTTGATTCATGCTGGTTCATTTATATGTGAATATTCAGGGGTTATTCTTACCATGGATCAAGCCAATGTTCTATCTATGAATGGGGATACATTAGTTTATCCGAATCGATTTTCGGATAGATGGGCAGAATGGGGTGATCTAACTCAAATAGATTCCAATTATGTTAGACCATCTTACCCTTCTGTACCTCCATTGGATTTTGCAATGGATGTTTCAAAAATGAGGAATGTTGCTTGTTATATAAGCCATAGTACGGTCCCAAATGTGTTGGCTCAGTTTGTTTTATATGATCATAATAATCTTATGTTCCCTCACTTGATGTTGTTTGCAATGGAAACCATCCCTCCTTTGAGAGAGCTTAGCCTTGACTATGGTGTTGTGGACGAATTGGCCGGAAAGCTCTCTATTTGTAACTGA 2100 43.81 MRAKLHLPLKILTFCSHKMGSTIPVLDLNLLPDPAASVENNNNIYSFKIPKIEPKHEPFDEAPLETSQPPQQPQQLLQSFLPDPSPNIFSHSPVTPPPLPEQNPNSFSQPSNIFSSDVDNVHSEFNRISELFNTAFPKRLDNYECEAELDPESGAIVPVPPENQVSTTVVARRKYPKRSSELVRVTDLSVDDHRYFRDVVRRTRMIFDSLRILTLVEVEKRRDSGLSRRLRGDLVASSVLRERGLWLNRDKRIVGSIPGVYIGDLFLFRMELCVVGLHGQTQAGIDYVPASQSSNGEPIATSIIVSGGYEDDDDAGDVLIYTGHGGQDKFSSKQSTHQKLEGGNLALERSMHYQIEVRVIRGIKHPGSFTNKVYVYDGLYRILDCWFDVGKSGFGVYKYKLVRTGGQPEMGSTVLKFAESLRTNPMSVRPMGYLSLDISVKKENIPVLLFNDIDNDQEPLFYDYLLRTVFPPFAFHQSGNGTGCDCVSGCVDDCFCAIKNGGEFAYDHNGFLVRGKPVVFECGPFCQCPPQCRNRVSQKGIKHRLEVFRSRETGWGVRSLDLIHAGSFICEYSGVILTMDQANVLSMNGDTLVYPNRFSDRWAEWGDLTQIDSNYVRPSYPSVPPLDFAMDVSKMRNVACYISHSTVPNVLAQFVLYDHNNLMFPHLMLFAMETIPPLRELSLDYGVVDELAGKLSICN 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1667169 1670277 - Conep04aG0038100.1 Cone4ag0368 435346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0368 699 Gene3D SET domain 413 699 IPR046341 -
Cone4ag0368 699 ProSiteProfiles Pre-SET domain profile. 482 540 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone4ag0368 699 Pfam SET domain 554 686 IPR001214 GO:0005515(InterPro)
Cone4ag0368 699 MobiDBLite consensus disorder prediction 89 104 - -
Cone4ag0368 699 ProSiteProfiles SET domain profile. 543 686 IPR001214 GO:0005515(InterPro)
Cone4ag0368 699 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 121 686 IPR051357 GO:0003690(PANTHER)|GO:0016571(PANTHER)|GO:0042054(PANTHER)
Cone4ag0368 699 Pfam Pre-SET motif 441 535 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone4ag0368 699 ProSiteProfiles YDG domain profile. 255 403 IPR003105 -
Cone4ag0368 699 Pfam SAD/SRA domain 254 407 IPR003105 -
Cone4ag0368 699 SUPERFAMILY PUA domain-like 238 417 IPR015947 -
Cone4ag0368 699 Gene3D - 252 412 IPR036987 -
Cone4ag0368 699 SMART set_7 543 692 IPR001214 GO:0005515(InterPro)
Cone4ag0368 699 SMART G9a_1 250 407 IPR003105 -
Cone4ag0368 699 MobiDBLite consensus disorder prediction 65 88 - -
Cone4ag0368 699 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 237 420 - -
Cone4ag0368 699 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 111 699 IPR025794 GO:0042054(InterPro)
Cone4ag0368 699 SMART preset_2 435 527 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone4ag0368 699 SUPERFAMILY SET domain 427 687 IPR046341 -
Cone4ag0368 699 MobiDBLite consensus disorder prediction 57 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0368 K11420 - - csv:101222210 1035.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0368 Cone-Chr4:1667169 Cone6ag0634 Cone-Chr6:3210666 1.01E-114 dispersed
Cone14ag0190 Cone-Chr14:866373 Cone4ag0368 Cone-Chr4:1667169 1.77E-17 transposed
Cone14ag0189 Cone-Chr14:864936 Cone4ag0368 Cone-Chr4:1667169 9.37E-268 wgd
Cone18ag0798 Cone-Chr18:4694881 Cone4ag0368 Cone-Chr4:1667169 3.58E-15 wgd
Cone4ag0368 Cone-Chr4:1667169 Cone7ag0355 Cone-Chr7:1542641 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g800 . . . . . Bpe14g01288 . . . . Cma06g01287 Cma14g01850 Car06g01105 Car14g01658 . . Cpe03g01550 . . . . . . . . . . . . . . Cone14ag0189 . Cone7ag0355 Cone4ag0368 Lsi05g01779 . . Cme06g00442 Blo02g00682 . . Bda13g00032 . . Bma02g00745 . . Cmo06g01292 Cmo14g01895 . . . . . . . . . . . . . Cla05g00401 Cam05g0437 Cec05g0443 Cco05g0442 Clacu05g0432 Cmu05g0413 Cre05g0474 . Csa03g01158 Chy06g00421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007214 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45916 None None None None Cone TR