Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0373 ATGCTCTGCGCCGGCTCAGTCCGAGCCAAAAACACCATGAACATCATGCTTACCAACGTCCTAGACGCCGCAGCCGGTGGCCTGTTCTACTACCTATTTGGCTACGCCTTCGCCTTTGGCTCACCTTCTAACGGCTTCATCGGCCGTCATTTCTTCGCCCTTAAAGATTTCCCTTCCGACTCCGCCGATTACAGTGTTTTTCTCTACCAATGGGCCTTTGCCATCGCCGCCGCCGGAATCACCAGCGGCTCAATCGCCGAGCGGACCCAGTTCGTGGCTTATTTGATATACTCTTCTTTCCTGACCGGATTCGTTTACCCGGTGGTTTCTCACTGGTTCTGGTCCGGCGATGGGTGGGCCAGTGCTCTGAGATCCGACGGAGACTTTCTCTTCGGAACTGGAGTTATCGACTTTGCCGGATCCGGTGTGGTACATATGGTCGGAGGACTTGCCGGGTTATGGGGGGCCTTAATCGAAGGCCCGAGAATAGGCCGGTTTGATCATTCAGGCCGGTCCGTTGCGCTACGTGGCCACAGTGCTTCCTTAGTCGTACTCGGGACCTTCATGCTTTGGTTCGGGTGGTACGGGTTCAATCCCGGTTCCTTCACGAAAATTCTCGTCCCTTACACTTCAGGAAACTATTACGGGCAGTGGAGCGCCATCGGACGGACAGCTGTCACCACCACACTGGCAGGGTCCACAGCGGCTCTCACCACCTTGTTTGGAAAAAGGATACTCTCGGGTCATTGGAACGTAACTGACGTGTGTAACGGACTACTCGGTGGGTTTGCGGCTATAACCGCCGGATGCTCAGTGGTCGAGCCGTGGGCCGCGATCGTATGCGGGTTCGTAGCATCGATCGTGTTGATCAGTTGCAACAAGTTAGCGGAGAAGGTCGAGTATGACGACCCACTAGAGGCGGCCCAACTGCACGGAGGATGTGGGGCATGGGGGATAATATTTACTGCCTTGTTTGCGACGGAGAAGTACGTGAACGAGGTGTATCCGGGGAAACCGGGCCGTCCATACGGATTGTTTATGGGTGGTGGTGGAAGGTTATTATTGGCCCATTTAATCCAAATACTGGTGATTGTTGGGTGGGTTAGTGCCACTATGGGACCCTTATTTTACTTGCTTCATAAACTAAAGCTTTTGAGGATATCAGCTGAGGATGAAATGGCGGGTATGGATATGACACGGCACGGAGGAATGGCTTATATTTACCGTGATGAAGATGACTCCGAGAAGTCTCACATGATTCAGCTGAAGAAGATTGAACCAAATTCAACCGCTCCAACCACAATTTAG 1308 52.91 MLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGRHFFALKDFPSDSADYSVFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSGDGWASALRSDGDFLFGTGVIDFAGSGVVHMVGGLAGLWGALIEGPRIGRFDHSGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILVPYTSGNYYGQWSAIGRTAVTTTLAGSTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVASIVLISCNKLAEKVEYDDPLEAAQLHGGCGAWGIIFTALFATEKYVNEVYPGKPGRPYGLFMGGGGRLLLAHLIQILVIVGWVSATMGPLFYLLHKLKLLRISAEDEMAGMDMTRHGGMAYIYRDEDDSEKSHMIQLKKIEPNSTAPTTI 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1686595 1687902 + Conep04aG0038600.1 Cone4ag0373 435351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0373 435 ProSitePatterns Ammonium transporters signature. 137 162 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone4ag0373 435 PANTHER AMMONIUM TRANSPORTER 1 415 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cone4ag0373 435 Gene3D Ammonium transporter AmtB like domains 1 426 IPR029020 -
Cone4ag0373 435 NCBIfam ammonium transporter 1 406 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone4ag0373 435 FunFam Ammonium transporter 1 421 - -
Cone4ag0373 435 SUPERFAMILY Ammonium transporter 1 387 - -
Cone4ag0373 435 Pfam Ammonium Transporter Family 1 406 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0630 Cone-Chr10:3005138 Cone4ag0373 Cone-Chr4:1686595 8.51E-261 dispersed
Cone1ag0573 Cone-Chr1:5801865 Cone4ag0373 Cone-Chr4:1686595 7.57E-202 dispersed
Cone4ag0373 Cone-Chr4:1686595 Cone7ag0360 Cone-Chr7:1565355 1.90e-311 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0373 K03320 - mdm:103453520 724.546