Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0377 ATGTACCGTGTAGCTTCAAGTCTCGCTTCTAAAGCTCGGATCGCCAGGAATGCTACCACTATTGGTAGTAATTTGAGTTGGAGCAGGAACTATGCGGCCAAAGATATCAAATTTGGGGTGGAAGCCCGAGCACTGATGCTTAAGGGCGTGGAAGAGCTCGCTGATGCTGTCAGAGTGACTATGGGCCCTAAGGGACGGAATGTGGTAATTGAACAAAGCTATGGTGCCCCTAAAGTGACTAAAGATGGTGTAACTGTTGCAAAGAGTATAGAGTTCAGTGACAGAGTCAAGAATGTAGGTGCCAGCCTTGTGAAACAGGTAGCCAATGCGACCAATGATGCAGCAGGAGATGGTACCACTTGTGCTACTGTTCTTACACGGGCGATATTTACTGAAGGATGCAAGTCAGTTGCTGCTGGTATGAATGCAATGGACCTAAGACGTGGTATAACCATGGCAGTTGATGCTGTTGTCACTAACTTGAAGAGTAGGGCAAAGATGATCAGCACTTCTGAAGAGATAGCCCAGGTTGGTACAATATCAGCAAATGGAGAAAGAGAAATTGGTGAGTTGATTGCCAAGGCTATGGAGAAAGTTGGTAAAGAGGGAGTTATCACAATATCTGATGGGAAGACAATGGATAATGAATTGGAAGTTGTTGAAGGAATGAAGTTAGACAGGGGATTCATATCCCCCTATTTTATCACGAACCCGAAAAACCAGAAATGTGAATTGGAAAATCCTCTCATTCTAATTCACGAGAAGAAAATCTCAAGCATAAATGCAGTGGTCAAAGTACTAGAGCTGGCTTTGAAGAGACAAAGGCCATTACTGATTGTTGCTGAAGATATCGAAAGTGAGGCGCTGGCTACTCTTATTTTGAATAAGCTCCGAGCTGGAATTAAGGTCTGTGCCATAAAAGCCCCTGGTTTCGGTGAAAACAGGAAGTCTAATCTACAAGATCTTTCTGTTCTCACAGGAGGTGATGTTATTACTGAAGAGCTTGGTATGAATCTTGAAAAGGTAGACTTTGATATGCTCGGGACTTGCAAGAAGGTAACAGTATCAAAAGACGACACTGTGATTCTCGATGGTGCCGGTGACAAGAAGGCTATTGAGGAAAGATGCGAACAGATTAGGTCGACCATAGAGAATAGCACTTCTGATTATGATAAGGAAAAGCTACAAGAGAGACTGGCGAAACTCTCAGGTGGTGTGGCCGTATTGAAGATCGGAGGTGCTAGTGAAACTGAAGTTAGTGAGAAGAAGGATAGAGTTACGGATGCTTTGAATGCCACAAAGGCAGCTGTAGAGGAGGGTATAGTACCAGGAGGAGGAGTCGCCCTTCTTTATGCATCAAAAGAGCTGGACAAGCTGCAGACTGCAAACTTTGATCAGAAGATTGGTGTCCAGATTATTCAGAATGCATTGAAGACACCTGTGCACACTATTGCCTCTAACGCCGGAGTTGAAGGGGCCATTGTTGTTGGTAAACTGTTGGAGCAAGACAACCAAGATCTTGGTTATGATGCAGCCAAAGGTGAATATGTGGACATGGTCAAATCTGGAATTATAGACCCATTGAAAGTAATTAGAACTGCTTTGGTTGATGCAGCCAGCGTGTCTTCTTTGTTGACAACAACTGAAGCAGTGGTTGTTGAACTCCCCAAGGACGATAGGGAGGCTCCGGCAATGGGTGGTGGCATGGGTGGAATGGACTACTAA 1725 44.52 MYRVASSLASKARIARNATTIGSNLSWSRNYAAKDIKFGVEARALMLKGVEELADAVRVTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFSDRVKNVGASLVKQVANATNDAAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGITMAVDAVVTNLKSRAKMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTMDNELEVVEGMKLDRGFISPYFITNPKNQKCELENPLILIHEKKISSINAVVKVLELALKRQRPLLIVAEDIESEALATLILNKLRAGIKVCAIKAPGFGENRKSNLQDLSVLTGGDVITEELGMNLEKVDFDMLGTCKKVTVSKDDTVILDGAGDKKAIEERCEQIRSTIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASETEVSEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAIVVGKLLEQDNQDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLLTTTEAVVVELPKDDREAPAMGGGMGGMDY 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1718905 1723160 + Conep04aG0039000.1 Cone4ag0377 435355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0377 574 SUPERFAMILY GroEL equatorial domain-like 36 552 IPR027413 -
Cone4ag0377 574 CDD GroEL 34 554 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cone4ag0377 574 SUPERFAMILY GroEL apical domain-like 214 406 IPR027409 -
Cone4ag0377 574 Gene3D - 36 553 IPR027413 -
Cone4ag0377 574 FunFam 60 kDa chaperonin 36 222 - -
Cone4ag0377 574 Coils Coil 369 389 - -
Cone4ag0377 574 PRINTS 60kDa chaperonin signature 380 405 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cone4ag0377 574 PRINTS 60kDa chaperonin signature 298 321 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cone4ag0377 574 PRINTS 60kDa chaperonin signature 428 449 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cone4ag0377 574 PRINTS 60kDa chaperonin signature 57 83 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cone4ag0377 574 PRINTS 60kDa chaperonin signature 113 140 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cone4ag0377 574 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 28 561 IPR001844 GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006457(PANTHER)|GO:0042026(InterPro)|GO:0140662(InterPro)
Cone4ag0377 574 Hamap Chaperonin GroEL [groEL]. 32 572 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cone4ag0377 574 ProSitePatterns Chaperonins cpn60 signature. 435 446 IPR018370 GO:0005524(InterPro)|GO:0006457(InterPro)
Cone4ag0377 574 FunFam 60 kDa chaperonin 222 403 - -
Cone4ag0377 574 NCBIfam chaperonin GroEL 33 557 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cone4ag0377 574 Gene3D - 167 440 IPR027410 -
Cone4ag0377 574 Pfam TCP-1/cpn60 chaperonin family 53 553 IPR002423 GO:0005524(InterPro)
Cone4ag0377 574 Gene3D GroEL 222 403 IPR027409 -
Cone4ag0377 574 SUPERFAMILY GroEL-intermediate domain like 168 234 IPR027410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0377 K04077 - - cit:102620413 995.727
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0265 Cone-Chr18:1273730 Cone4ag0377 Cone-Chr4:1718905 2.25E-158 dispersed
Cone19ag0880 Cone-Chr19:6896795 Cone4ag0377 Cone-Chr4:1718905 7.59E-14 dispersed
Cone19ag0881 Cone-Chr19:6898850 Cone4ag0377 Cone-Chr4:1718905 7.07E-10 dispersed
Cone4ag0377 Cone-Chr4:1718905 Cone5ag1513 Cone-Chr5:10284396 5.66E-107 dispersed
Cone14ag0201 Cone-Chr14:917172 Cone4ag0377 Cone-Chr4:1718905 0 wgd
Cone15ag0219 Cone-Chr15:1036298 Cone4ag0377 Cone-Chr4:1718905 0 wgd
Cone4ag0377 Cone-Chr4:1718905 Cone7ag0364 Cone-Chr7:1584451 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g828 Blo01g00313 Blo12g00132 Bda03g01108 . Bpe04g01053 . Bma04g01034 Bma05g01268 . . . . . . . . . . . . . . . . Cla06g00710 Cam06g0764 Cec06g0768 Cco06g0779 Clacu06g0752 Cmu06g0735 Cre06g1515 Cone14ag0201 Cone15ag0219 . Cone4ag0377 . . . . . . . . Bpe05g01123 . . . . . . . . . . . Cpe17g00226 Bhi12g01535 . . Lac12g2109 . . . . . . . . . . . . . Cme05g00632
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000827 3 3 3 3 3 3 4 3 3 2 3 3 4 2 3 4 3 5 4 3 3 2 3 3 3 2 3 4 2 2 91