Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0383 ATGGCAATGGCGGTTTCTGCAGGAAGGAAATGGTTCGGTTTGTGTTTGGCTCTGCTCGTAACGATGCTCGCCGGAACAATGTTGGCCAGAGTTTCCAAGGACCAGATCTCTGATACTTGGAATGAGATAGTAGAGAAGTTCCAAAGGTCAGCAAACTCAACAATGGCGGCGAGGCTGGAAGAAGATGAGACTGATGCGAGACTGAACACTGACCACCATGAGTTGGACGACCCAGAAGAGATTGTTGCCATGGTTGAAATGAGCATTAGGAATAGTACAGAAAGAAGGAAGCTGGGTTACTTCTCTTGTGGGACCGGCAATCCAATCGATGACTGTTGGCGTTGTGATCCCAACTGGCACAAAAACCGAAAGCGCCTTGCCGATTGCGGGATCGGTTTTGGCCGAAATGCAGTTGGAGGACGTGACGGCCGTTTTTACGTCGTAACTGATTCAAGCGACCATGACCCGGTCAACCCCAAACCCGGAACTCTCCGCCATGCTGTTATCCAAGACAGACCACTGTGGATCGTGTTCAAAAGAGACATGGTGATACAGTTGGAACAGGAGCTGATCATGAACAGTTTCAAGACCATTGATGGTCGTGGGGTCAATGTCCACATTGCTAATGGTGCATGTATCACAATCCAGTACGTTACTAATGTGATCATCCATGGTTTGCATATACATGACTGTAAGCCGACTGGGAATGCTATGGTGAGAAGCTCGCCTAGTCACTTTGGGTGGAGGACTATGGCTGATGGGGATGCTATCTCCATTTTTGGGTCTAGTCATATATGGGTTGATCATAACTCCCTTTCTAATTGTGCTGATGGGCTTGTTGATGCTGTTATGGGGTCCACTGCAATTACCGTTTCAAACAATCACTTTACTCATCACAATGAGGTGATGCTGTTGGGACACAGTGATTCTTATACAAAGGACAAGCAAATGCAAGTCACCATTGCATACAACCATTTTGGTGAGGGTCTGATTCAGAGAATGCCAAGATGTAGACATGGATATTTTCATGTGGTGAACAACGACTACACTCACTGGGAAATGTATGCAATCGGTGGGAGTGCAAACCCCACCATCAATAGCCAGGGCAATAGATATGCTGCTCCGGCCAACCCATTTGCAAAAGAGGTGACCAAGAGAGTGGAAACAGCTGCAAGCGAGTGGAAGGGGTGGAATTGGAGATCAGAGGGAGATATGCTGGTGAATGGTGCTTACTTCACCCCATCTGGTGCTGGAGCTTCATCTAGTTATGCCAAGGCTTCGAGCTTGGGAGCAAAATCTTCATCAATGGTGGCAACTATTACTTCTGGTTCTGGTGTTCTTGGTTGCCGCAGAGGCCATCCTTGCTAG 1368 47.73 MAMAVSAGRKWFGLCLALLVTMLAGTMLARVSKDQISDTWNEIVEKFQRSANSTMAARLEEDETDARLNTDHHELDDPEEIVAMVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAVGGRDGRFYVVTDSSDHDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLEQELIMNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPANPFAKEVTKRVETAASEWKGWNWRSEGDMLVNGAYFTPSGAGASSSYAKASSLGAKSSSMVATITSGSGVLGCRRGHPC 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1736681 1740668 - Conep04aG0039600.1 Cone4ag0383 435361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0383 455 Gene3D - 106 448 IPR012334 -
Cone4ag0383 455 PRINTS Pollen allergen Amb family signature 355 374 IPR018082 -
Cone4ag0383 455 PRINTS Pollen allergen Amb family signature 189 205 IPR018082 -
Cone4ag0383 455 PRINTS Pollen allergen Amb family signature 333 352 IPR018082 -
Cone4ag0383 455 PRINTS Pollen allergen Amb family signature 253 274 IPR018082 -
Cone4ag0383 455 PRINTS Pollen allergen Amb family signature 426 449 IPR018082 -
Cone4ag0383 455 PRINTS Pollen allergen Amb family signature 129 146 IPR018082 -
Cone4ag0383 455 PRINTS Pollen allergen Amb family signature 397 421 IPR018082 -
Cone4ag0383 455 PRINTS Pollen allergen Amb family signature 153 178 IPR018082 -
Cone4ag0383 455 SMART amb_all 181 378 IPR002022 -
Cone4ag0383 455 Pfam Pectate lyase 191 370 IPR002022 -
Cone4ag0383 455 PANTHER PECTATE LYASE 18-RELATED 26 452 IPR045032 GO:0030570(InterPro)
Cone4ag0383 455 SUPERFAMILY Pectin lyase-like 82 449 IPR011050 -
Cone4ag0383 455 FunFam Pectate lyase 106 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0724 Cone-Chr12:6660506 Cone4ag0383 Cone-Chr4:1736681 7.88E-99 dispersed
Cone17ag0671 Cone-Chr17:4247745 Cone4ag0383 Cone-Chr4:1736681 1.76E-236 dispersed
Cone4ag0383 Cone-Chr4:1736681 Cone8ag0710 Cone-Chr8:7123264 4.99E-202 dispersed
Cone14ag0210 Cone-Chr14:975609 Cone4ag0383 Cone-Chr4:1736681 3.39E-265 wgd
Cone15ag0231 Cone-Chr15:1079114 Cone4ag0383 Cone-Chr4:1736681 1.86E-262 wgd
Cone4ag0383 Cone-Chr4:1736681 Cone7ag0370 Cone-Chr7:1620380 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0383 K01728 - rcu:8258025 758.059