Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0386 ATGGTTATGACTAGGGAGACTAATGGTACTACTTCCGGTCAAGAGTTTATTCCGATCGACCTAATCAAGGCGGATAGAAATGTAAATGACATTTGTTCACAAACTGGCGAGGAATTTTCCTCGGACTTTCTCCTAGATCGAGCCGCTGTTGGAAGATTTTTTACCTTGAGCGTTATGGACCCTTGGCAACACCACCACCAAGAAAGACTGATGGGTTATAATTTTCCTTCTGGATTGCGTATTGATTCTCAATCTAGTTCTGATATAACTGCCAATATGCCTAGATACTATCATGAATACGGTCTCACCAGTCAACCGCTTTCCAGAGTAGTTAGTCCTAGCCAAACCGCCCTTCCCCTCAATGCATTAGAATCCACTCATGCTATTGGGAAGGGCTATACGGATGGGCCTTCTTCTTCTTCTTCCTCTGGCAAGATAAAATTTTTATGCAGTTTTGGTGGGAGGATATTACCGAGACCAGGTGACGGAAAACTCCGATATGTAGGCGGAGAAACAAGGATCATATCGATCCGAAAAAACATCACATTGGAAGAACTTATGAAGAAGACTTTCGGATTTTGTGACCAACCTCACACGATCAAGTACCAACTTCCGAGCGAAGATCTAGACGCACTTATCTCGGTTTGTTCGGATGAAGATCTCCATCACATGATAGAGGAATATGAAGAGCTTGAACGGGTAGGCGGGTCCCAGAAACTCCGGATTTTTCTTTTATCTTCAAGTGACCAATTAGAGAATCCGATTTCAGTCGAAGCGACAAAGTGTAGTATGCAGCCAAGTGATGTTGACTATCAATATGTTTCAGCCGTTAATGGTATGTTTGACCAAAGCCACGGAAAGAGCTCGAGCGGTCAAAGTTTTAAAAGCCGGGTTAGCCAGATGGGAACGGCCTCAGAAGGGAGCCCGAATTTCGGAAACTCGCCTACTTCAGCTTATGCAAAAGAGTTGAAGAATAAGAGTTTAAGTTCGTCAAATCTGGCTGGTATGTTCTCTAGAACAGCCGGTCAATTGTTAAGCACTATTCGAATCCCTGGCCCCACAAAGTCGTTCAATCAATCACCATCTATATCTCCCATTCCGTTCGAGCAAAGGGATTTTGAGTCTAATTCTAACCAACCATTATTTTTGGAAAATAACAACAGTAATAATAATAACAATAGAGCATACATGGAAGGTAATGGAAGTAGTATGCCTGCTTTTGTTCGGGAAAAACATCCTAGTGAAAATTCGTATTATGTCGATGCTATGGACTATTACAATTATCTTCAACACAACTATGCCTGTAACAAGATGCATAATGGGGACAACTTGCATAATCTGAATCCCGGGAAATATTTTCTTCCTTCTCTGATTTATGCTCAAAGCGATATGGATACGGAATATCCAACACGTGCTCGTGGTTCTGGATCAAGGTCCCAAGAAAGAGAAGAGAAGTGCAATTGTAAAACGGAAAGAATAGCTATTGTGCATATAGAGAAACCACCATCACCTTTACCAGTTTCATTATCTCAAGGTGAAAGGGGTGTCAATGAATCGATTTTGACACCGCATCAATGTCACAACGGAAAGTTTGAAGCTTGTCCAGAAATGTTAATAACCATGGCAAGGAACGATACTACTCATGCCGATCAAAAAGGAGTACTGCATTGCAAACGCGGTAATGAAAAAGTCACATCATCTGATAATACCATGACTGTTAATAATAATAACTTCCACTGCATAAACAACATACAAAGCACCAAGTGCGGGGTTTCTATAGTAGACACAGCTCTTACGAAGATTCTTATTAAGAATCAGGATTCTTCTAAAGATCAACAAACTACTACTACGACGTCTAGTGAAGTAATTAGGAGTCAACCCGTTTCTCATGCGCATGAATCGCCTTGTCTACTAGATCATGGCCTGAAATTCCATACTTCGGCTTCAAGTAGTGAGGTTGATAAAAAGGATGAATGCAATAAATTAACAGAAGTAACAGTTGTTGTTGAAGATGTAACAGATCATATCCCTGAAGGAATCCCCATTACTTCCAAAATTATCCCACGTTTCGAAAACGAGGACAGTGAAGAGTATGAATCCAGGGGTAAGTGTACTAGTACACAATCCGAAAAAAGCAAGCGAGTGAAAAGTGGGGACAAGGATCAGGACAAGTTGATGATAAGTGATGGCACGATTGCTGAAATCGAGGCAGGAATATACGGTATGCAGATCATTAAGAATGATGACCTTGAAGAGCTACAAGAGCTAGGATCCGGTACATTTGGGACCGTTTATCACGGGAAGTGGAGGGGAACTGATGTTGCTATTAAGAGAATAAAAAAGAGTTGTTTTTCGGGCCGATCTTCTGAGCAAGGGCGATTGACTAAGGATTTCTGGAGAGAAGCAAGGATTCTATCAACTCTTCACCATCCAAATGTGGTGGCATTTTACGGAGTGGTTCCGGATGGACCTGAGGGATCTTTAGGGACTGTTACAGAGTACATGGTTAACGGATCGTTGAGACATGTTCTTTTAAGGAAAGAGAGAGTACTTGATCGTCGGAAGAGGCTCTTCATCGCAATGGATGCGGCTTTTGGGATGGAATATTTGCATTTGAAAAACATAGTTCACTTTGATTTGAAGTGTGACAATTTGCTCGTTAACTTGCGTGACCCGGATCGACCCATATGCAAGGTCGGAGATTTCGGGTTGTCAAGAATCAAGTGTAACACACTTGTTTCTGGAGGTGTACGAGGGACCCTCCCATGGATGGCCCCGGAATTGTTAGATGGGAGTAGTAGCCGTGTCTCGGAGAAGGTTGATGTCTTCTCGTTCGGAATTTCAATGTGGGAGATCTTGACGGGCGAGGAGCCCTACGCTAGTATGCATTGCGGTGCTATAATCGGTGGGATTGTAAATAATACACTGAGGCCTCCAATTCCAAAGCGGTGTGATCCAGAGTGGAAAAAGTTAATGGAAGATTGTTGGTCATGGGACCCCACGGTGAGGCCGTCGTTTAAAGAGATAGCAAATAAGCTCCGGGATATGTCGGATTTGCTCCCGAAAAAGCGACCTAATCTTGCAAAGAGATGA 3093 42.58 MVMTRETNGTTSGQEFIPIDLIKADRNVNDICSQTGEEFSSDFLLDRAAVGRFFTLSVMDPWQHHHQERLMGYNFPSGLRIDSQSSSDITANMPRYYHEYGLTSQPLSRVVSPSQTALPLNALESTHAIGKGYTDGPSSSSSSGKIKFLCSFGGRILPRPGDGKLRYVGGETRIISIRKNITLEELMKKTFGFCDQPHTIKYQLPSEDLDALISVCSDEDLHHMIEEYEELERVGGSQKLRIFLLSSSDQLENPISVEATKCSMQPSDVDYQYVSAVNGMFDQSHGKSSSGQSFKSRVSQMGTASEGSPNFGNSPTSAYAKELKNKSLSSSNLAGMFSRTAGQLLSTIRIPGPTKSFNQSPSISPIPFEQRDFESNSNQPLFLENNNSNNNNNRAYMEGNGSSMPAFVREKHPSENSYYVDAMDYYNYLQHNYACNKMHNGDNLHNLNPGKYFLPSLIYAQSDMDTEYPTRARGSGSRSQEREEKCNCKTERIAIVHIEKPPSPLPVSLSQGERGVNESILTPHQCHNGKFEACPEMLITMARNDTTHADQKGVLHCKRGNEKVTSSDNTMTVNNNNFHCINNIQSTKCGVSIVDTALTKILIKNQDSSKDQQTTTTTSSEVIRSQPVSHAHESPCLLDHGLKFHTSASSSEVDKKDECNKLTEVTVVVEDVTDHIPEGIPITSKIIPRFENEDSEEYESRGKCTSTQSEKSKRVKSGDKDQDKLMISDGTIAEIEAGIYGMQIIKNDDLEELQELGSGTFGTVYHGKWRGTDVAIKRIKKSCFSGRSSEQGRLTKDFWREARILSTLHHPNVVAFYGVVPDGPEGSLGTVTEYMVNGSLRHVLLRKERVLDRRKRLFIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPDRPICKVGDFGLSRIKCNTLVSGGVRGTLPWMAPELLDGSSSRVSEKVDVFSFGISMWEILTGEEPYASMHCGAIIGGIVNNTLRPPIPKRCDPEWKKLMEDCWSWDPTVRPSFKEIANKLRDMSDLLPKKRPNLAKR 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1751768 1755540 + Conep04aG0039900.1 Cone4ag0386 435364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0386 1030 Pfam PB1 domain 162 244 IPR000270 GO:0005515(InterPro)
Cone4ag0386 1030 PANTHER SERINE-THREONINE PROTEIN KINASE 109 1016 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone4ag0386 1030 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 838 1029 - -
Cone4ag0386 1030 SUPERFAMILY CAD & PB1 domains 162 249 - -
Cone4ag0386 1030 Gene3D - 164 247 - -
Cone4ag0386 1030 SUPERFAMILY Protein kinase-like (PK-like) 739 1012 IPR011009 -
Cone4ag0386 1030 Pfam Protein tyrosine and serine/threonine kinase 752 1013 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0386 1030 MobiDBLite consensus disorder prediction 606 631 - -
Cone4ag0386 1030 CDD STKc_MAP3K-like 756 1013 - -
Cone4ag0386 1030 SMART serkin_6 750 1020 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0386 1030 MobiDBLite consensus disorder prediction 606 627 - -
Cone4ag0386 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 875 887 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0386 1030 ProSitePatterns Protein kinases ATP-binding region signature. 756 781 IPR017441 GO:0005524(InterPro)
Cone4ag0386 1030 Gene3D Transferase(Phosphotransferase) domain 1 838 1028 - -
Cone4ag0386 1030 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 743 837 - -
Cone4ag0386 1030 MobiDBLite consensus disorder prediction 284 317 - -
Cone4ag0386 1030 MobiDBLite consensus disorder prediction 691 721 - -
Cone4ag0386 1030 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 165 247 - -
Cone4ag0386 1030 ProSiteProfiles Protein kinase domain profile. 750 1020 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0386 1030 Gene3D Phosphorylase Kinase; domain 1 743 837 - -
Cone4ag0386 1030 PRINTS Tyrosine kinase catalytic domain signature 832 845 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0386 1030 PRINTS Tyrosine kinase catalytic domain signature 869 887 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0386 1030 PRINTS Tyrosine kinase catalytic domain signature 984 1006 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0386 1030 PRINTS Tyrosine kinase catalytic domain signature 940 962 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0386 1030 CDD PB1_UP2 149 244 - -
Cone4ag0386 1030 SMART PB1_new 160 247 IPR000270 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0386 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0368 Cone-Chr16:6068296 Cone4ag0386 Cone-Chr4:1751768 1.34E-157 dispersed
Cone19ag1065 Cone-Chr19:7813829 Cone4ag0386 Cone-Chr4:1751768 1.79E-27 dispersed
Cone4ag0386 Cone-Chr4:1751768 Cone5ag1493 Cone-Chr5:10068797 1.48E-163 dispersed
Cone19ag0577 Cone-Chr19:5112892 Cone4ag0386 Cone-Chr4:1751768 3.43E-35 transposed
Cone20ag0848 Cone-Chr20:6175752 Cone4ag0386 Cone-Chr4:1751768 1.46E-185 transposed
Cone4ag0386 Cone-Chr4:1751768 Cone7ag0374 Cone-Chr7:1633463 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g850 . . . . . Bpe14g01297 . . . . Cma06g01264 Cma14g01874 Car06g01086 Car14g01677 . Cpe08g00383 Cpe03g01573 . . . . . . . . . . . . . . . . . Cone4ag0386 . . . Cme06g00407 . . . Bda13g00024 . . . . . Cmo06g01273 Cmo14g01923 . . . . . . . . . . . . . Cla05g00369 Cam05g0402 Cec05g0407 Cco05g0407 Clacu05g0397 Cmu05g0382 Cre05g0444 . Csa03g01125 Chy06g00391 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82735 PF00917 MATH 1.30E-24 CL0389 Cone PK