Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0387 ATGCAAGCCATTGTTATTTCCCAAACGCCAACGGCGCTCCTCCCTTTAAACCCTCCCCAACCAGCTCGCCGCCGATCTTTAGCGCTCCGATCATCACTTTCCCCCGCAGCGCAACCACAATCCGTCGCCGTCGACACTCCACCTCCTCCAACCACAACAACCACTCACAAGCTCAACAAATACAGCTCTCGTATCACCGAGCCGAAATCCCAGGGTGCGTCTCAAGCTGTACTTTATGGCGTCGGCCTGACCGACGACGATTTGAGCAAGCCGCAGATCGGAATCTCCTCAGTTTGGTATGAAGGAAACACTTGCAATATGCACTTGTTGAAGCTCTCTGAGGCTGTAAAAGAAGGGGTGAAAGAGGCGGGAATGGTTGGGTTTAGGTTTAACACAATTGGAGTTAGTGATGCTATCTCGATGGGGACGAGAGGCATGTGCTATAGCCTGCAGTCGAGGGATTTGATTGCTGATAGTATCGAGACTGTTATGAGTGCTCAGTGGTATGATGGTAATATCTCCATTCCTGGTTGTGACAAGAATATGCCAGGTACAATTATGGCTATGGGCAGGCTCAACCGACCAAGTATTATGGTGTATGGTGGAACCATCAAGCCTGGTCATTTTCAAGGACATACATTTGATATAGTATCAGCATTTCAGGTTTATGGAGAATATGTAAATGGTTCCATAAGTGATGAAGATAGGAGGAATGTACTCTTTAACTCTTGTCCAGGGGCAGGTGCTTGTGGGGGAATGTACACAGCTAATACAATGGCTTCTGCTATTGAAGTCATGGGAATGTCTCTTCCTTACAGCTCTTCAACACCTGCTGAAGACCCATTAAAGTTGGATGAGTGCCGATTAGCCGGAAAATATCTTCTGGAACTGATAAAAATGGACTTGAAACCACGAGATATTATCACTCCCAAATCATTACGTAATGCTATGGTTATTGTCATGGCCCTAGGTGGGTCAACCAATGCTGTGCTACACTTAATCGCTATCGCAAGGGCTGTTGGTTTGGATTTAACTCTAGATGATTTTCAGAAGGTTAGCGATCAAGTCCCTTTTCTTGCCGATCTTAAGCCAAGTGGGAAATATGTTATGGAAGATGTCCACAAGATTGGAGGAACTCCTGCCGTTATTCGCTACCTTTTGGAGCAGGGATATTTGGATGGAGACTGTTTGACTGTCACTGGGAAGTCGCTTGCTGAAAATGCTAAAACCTTCCTACCTTTAACCAAAGGGCAGGATATTATTAGGCCATTGGAGAATCCTATCAAGAAAACAGGCCATATACAAATACTATATGGAAATCTTGCCCCAGAGGGTTCAGTAGCAAAAATTACTGGAAAGGAGGGGCTGTACTTCTCTGGCCCTGCTCTCATCTTTGAAGGGGAGGAATCAATGATTGCTGCTATATCAGAGAACCCTGCTAGTTTTAAGGGAAAAGTAGTGGTCATAAGGCAGGAAGGTCCCAAGGGAGGACCTGGCATGCCGGAAATGTTAACACCAACTAGTGCCATAATGGGAGCAGGGCTTGGAAAGGAAGTGGCATTGCTGACTGACGGTAGATTTTCCGGTGGGTCCCATGGATTTGTTGTGGGCCACGTCTGCCCTGAAGCCCAGGAAGGTGGTCCAATCGGATTAATTGAAAATGGAGATATAATCAGCATTGATGTTAACAAGAAGAGAATAGATGTTCAGTTAACCGATGCAGAGATTGAAGAGCGGAGAAAGAAATGGACTCCTCCTGCATATAAGGCTGATCGGGGAGTTTTATACAAGTATATCAAGAACGTGCAATCGGCGTCAACTGGGTGTGTGACTGATGAGTAG 1842 46.04 MQAIVISQTPTALLPLNPPQPARRRSLALRSSLSPAAQPQSVAVDTPPPPTTTTTHKLNKYSSRITEPKSQGASQAVLYGVGLTDDDLSKPQIGISSVWYEGNTCNMHLLKLSEAVKEGVKEAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIPGCDKNMPGTIMAMGRLNRPSIMVYGGTIKPGHFQGHTFDIVSAFQVYGEYVNGSISDEDRRNVLFNSCPGAGACGGMYTANTMASAIEVMGMSLPYSSSTPAEDPLKLDECRLAGKYLLELIKMDLKPRDIITPKSLRNAMVIVMALGGSTNAVLHLIAIARAVGLDLTLDDFQKVSDQVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLEQGYLDGDCLTVTGKSLAENAKTFLPLTKGQDIIRPLENPIKKTGHIQILYGNLAPEGSVAKITGKEGLYFSGPALIFEGEESMIAAISENPASFKGKVVVIRQEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQEGGPIGLIENGDIISIDVNKKRIDVQLTDAEIEERRKKWTPPAYKADRGVLYKYIKNVQSASTGCVTDE 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1756989 1760681 - Conep04aG0040000.1 Cone4ag0387 435365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0387 613 NCBIfam dihydroxy-acid dehydratase 74 612 IPR004404 GO:0004160(InterPro)|GO:0009082(InterPro)
Cone4ag0387 613 MobiDBLite consensus disorder prediction 31 57 - -
Cone4ag0387 613 MobiDBLite consensus disorder prediction 15 57 - -
Cone4ag0387 613 ProSitePatterns Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 520 531 IPR020558 GO:0003824(InterPro)
Cone4ag0387 613 Pfam Dehydratase family 90 609 IPR000581 GO:0016836(InterPro)
Cone4ag0387 613 SUPERFAMILY LeuD/IlvD-like 434 612 - -
Cone4ag0387 613 PANTHER DIHYDROXY-ACID DEHYDRATASE DAD 50 613 IPR050165 GO:0004160(PANTHER)|GO:0009082(PANTHER)|GO:0009570(PANTHER)
Cone4ag0387 613 Hamap Dihydroxy-acid dehydratase [ilvD]. 60 612 IPR004404 GO:0004160(InterPro)|GO:0009082(InterPro)
Cone4ag0387 613 Gene3D - 433 583 IPR042096 -
Cone4ag0387 613 SUPERFAMILY IlvD/EDD N-terminal domain-like 50 432 IPR037237 -
Cone4ag0387 613 ProSitePatterns Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 178 188 IPR020558 GO:0003824(InterPro)
Cone4ag0387 613 FunFam Dihydroxy-acid dehydratase 433 583 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0387 K01687 - - csv:101217323 1008.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g860 . . . . . Bpe14g01299 . . . . Cma06g01261 Cma14g01879 Car06g01084 Car14g01681 . Cpe08g00385 Cpe03g01576 . . . . . . . . . . . . . . . . . Cone4ag0387 . . . Cme06g00401 . . . Bda13g00022 . . . . . Cmo06g01270 Cmo14g01927 . . . . . . . . . . . . . Cla05g00366 Cam05g0399 Cec05g0404 Cco05g0404 Clacu05g0394 Cmu05g0379 Cre05g0441 . Csa03g01120 Chy06g00388 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007213 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 2 1 37