Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0392 ATGTCTTCCTCTCTTCCGCTTCCTTTCAATCTCTGGCTTCGTAACAGACCTTGCTCGCCATTTCAGCCTACAGTCTCGTTCTTCTCAAACTCCAAAACCTCTGTACAGCTCCTTGCTTTCAAATCTCTCATCTGCTATGCCTCTAATAATCCTTCTAACTACGAGCGTGAAGAGGTCCGATGGCTCAGAGAGGAGCAGCGTTGGATTAGAGAAGAGCAGAGATGGTTCCGAGAAGAGCAGAGGTGGACCAGCGAGCGTGAATCACTTCTCCGCGAAATTGCAGACCTCAAGCTTCGAATTCAAGCGCTAGAGCACCAAAATTCGGTTCAAGTAGGGACGGATTCTGGTTCTGAGGCGATTTCAAATATAGCTGGATTACTGCATCTGTTGAAGGAGAAGAATCGGATTGCTGAGAGCGGATCGGTTGCGTGTCCAATGGTGTTGGAGGAGAGGAGCGATGAAGAGGAGGTCGTGGAGAAGGAGGTAGTAATGGAAGAAGTGGTAAGGTCCTCGGAAGAGATTTTAGAGACATTGAAGGAGTGGACTACTTTGAGGAAGGGATCAGAAGGAGAAGAGGTCCGAGAGATGCAGGAAGCTTTGCAAAAGTTAGGATTTTACTCTGGTGAAGAAGACATGGAATTTTCTAGCTTCTCAAGTGGGACCGAGCGTGCTGTGAAAACATGGCAAGCCAGTTTAGGCGCCCCTGAAGATGGGATAATGACTTCTGAACTCCTTCAGATTTTATATATAGGGGAAAGAGACGAGAGCGCCGGCCTGAATATAATCGCAAATCAGAAAGGGAGCACTCCAAGCACTGTGACAAAGCAAGGTGCAGATGGAACCGCAATTTCTTCTGTAATGGGAAGTTCGGAGATTCGAAGGACGGTTGTGAAAGAAGAGGGTGATACAGAAGTAAAGGCATCTGAACATGGAGTTTTCCTTTTAGGAGAGAATAGGTGGGAAGATTCCTCTAGACTTGCTGGTAATAAGAGAAAAGTTGTCGAAGGTAACAAATGCCTTACTTGTGGTGGAGAGGGTCGTTTGTTGTGCGCAGAATGTGATGGAACAGGCGAGCCGAATATCGAACCACAGTTCATGGAATTGCTGGAGGAGGAAACCAAATGTCCATACTGCGAGGGCTTAGGTTACACAATCTGTGAAGTTTGCAACGGGAAAACATTAGTTAAGCTTGCTACGAGCAGAAACAGTCCTAGTTGCTGA 1221 46.85 MSSSLPLPFNLWLRNRPCSPFQPTVSFFSNSKTSVQLLAFKSLICYASNNPSNYEREEVRWLREEQRWIREEQRWFREEQRWTSERESLLREIADLKLRIQALEHQNSVQVGTDSGSEAISNIAGLLHLLKEKNRIAESGSVACPMVLEERSDEEEVVEKEVVMEEVVRSSEEILETLKEWTTLRKGSEGEEVREMQEALQKLGFYSGEEDMEFSSFSSGTERAVKTWQASLGAPEDGIMTSELLQILYIGERDESAGLNIIANQKGSTPSTVTKQGADGTAISSVMGSSEIRRTVVKEEGDTEVKASEHGVFLLGENRWEDSSRLAGNKRKVVEGNKCLTCGGEGRLLCAECDGTGEPNIEPQFMELLEEETKCPYCEGLGYTICEVCNGKTLVKLATSRNSPSC 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1784047 1786702 - Conep04aG0040600.1 Cone4ag0392 435370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0392 406 Gene3D - 181 249 IPR036366 -
Cone4ag0392 406 Coils Coil 79 106 - -
Cone4ag0392 406 Gene3D - 329 397 - -
Cone4ag0392 406 Pfam Putative peptidoglycan binding domain 190 248 IPR002477 -
Cone4ag0392 406 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 338 395 IPR036410 -
Cone4ag0392 406 SUPERFAMILY PGBD-like 180 249 IPR036365 -
Cone4ag0392 406 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN 140 395 - GO:0003756(PANTHER)|GO:0009507(PANTHER)|GO:0009658(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0392 K22519 - - csv:101215886 370.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0392 Cone-Chr4:1784047 Cone7ag0382 Cone-Chr7:1673640 4.65E-202 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g862 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag0392 . . . . . . . . . . Bma02g00736 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012410 1 2 0 1 0 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 2 1 29