Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0397 ATGGGCGATGATGGGAAAGTCTACACCTTGGCGGAAGTAGCTGAGCACAAGACAGCTAGTGATTGTTGGCTAATCATCGACGGCAAGGTTTATGATGTGACAAAATTCTTAGAAGACCATCCGGGGGGCGACGAGGTTTTGGTGTCAGCTACAGGGAAGGATGCAACGGATGATTTTGAAGATGTGGGTCACAGTACGAGCGCAAAAGAAATGATGAAAGAATTCTATCTGGGAGAGATTAATTCCTCCACGGTCCCCAAAAAGGTGGTATATACCCCTCCGAACCAACCTCATTACAATCAGGACAAGACATCTGAGTTCATCATCAAAATCCTCCAGTTCCTAGTTCCGCTGGCCATCCTGGGTTTGGCTGTCGGAATCCGTATCTACACCAAATCATGA 402 47.01 MGDDGKVYTLAEVAEHKTASDCWLIIDGKVYDVTKFLEDHPGGDEVLVSATGKDATDDFEDVGHSTSAKEMMKEFYLGEINSSTVPKKVVYTPPNQPHYNQDKTSEFIIKILQFLVPLAILGLAVGIRIYTKS 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1806930 1808903 - Conep04aG0041100.1 Cone4ag0397 435375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0397 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cone4ag0397 133 Gene3D - 2 86 IPR036400 -
Cone4ag0397 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 88 IPR036400 -
Cone4ag0397 133 SMART Cyt_b5_2 8 81 IPR001199 -
Cone4ag0397 133 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cone4ag0397 133 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cone4ag0397 133 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cone4ag0397 133 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cone4ag0397 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cone4ag0397 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Cone4ag0397 133 PANTHER CYTOCHROME B5 5 125 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cone4ag0397 133 FunFam Cytochrome b5 type B 2 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0397 K23490 - - ath:AT2G32720 229.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0994 Cone-Chr18:7305465 Cone4ag0397 Cone-Chr4:1806930 5.07E-45 dispersed
Cone1ag1008 Cone-Chr1:55070293 Cone4ag0397 Cone-Chr4:1806930 2.62E-57 dispersed
Cone4ag0397 Cone-Chr4:1806930 Cone5ag0716 Cone-Chr5:3082824 4.20E-44 dispersed
Cone11ag0782 Cone-Chr11:6032601 Cone4ag0397 Cone-Chr4:1806930 5.07E-40 transposed
Cone4ag0958 Cone-Chr4:8200659 Cone4ag0397 Cone-Chr4:1806930 4.32E-19 transposed
Cone4ag0397 Cone-Chr4:1806930 Cone7ag0386 Cone-Chr7:1704037 4.46E-91 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1008 . 1 134 NADPH P450 reductases AT5G53560 73.1 1.1e-54 209.9
Cone5ag0716 . 1 168 NADPH P450 reductases AT5G53560 58.3 2.4e-49 192.2
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.1e-46 183.3
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.9e-46 182.6
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G53560 56.7 1.4e-41 166.4
Cone15ag0479 . 1 133 NADPH P450 reductases AT5G53560 52.2 1.6e-37 152.9
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G48810 65.2 7.4e-49 190.7
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G48810 65.2 1.3e-48 189.9
Cone1ag1008 . 1 135 NADPH P450 reductases AT5G48810 62.0 5.0e-45 177.9
Cone18ag0994 . 1 135 NADPH P450 reductases AT5G48810 55.9 6.3e-40 161.0
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G48810 53.7 2.4e-39 159.1
Cone7ag0386 . 22 133 NADPH P450 reductases AT2G32720 80.4 1.6e-48 189.5
Cone4ag0397 . 22 133 NADPH P450 reductases AT2G32720 79.5 4.6e-48 188.0
Cone1ag1008 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.8e-37 152.1
Cone4ag0958 . 1 117 NADPH P450 reductases AT1G60660 60.0 4.3e-37 151.4
Cone9ag0531 . 1 130 NADPH P450 reductases AT1G26340 59.7 5.5e-41 164.5
Cone3ag0519 . 2 281 NADPH P450 reductases AT5G17770 80.4 9.1e-131 463.8
Cone10ag0494 . 3 281 NADPH P450 reductases AT5G17770 81.0 2.2e-129 459.1
Cone5ag1478 . 8 278 NADPH P450 reductases AT5G17770 76.4 8.2e-124 440.7
Cone1ag0382 . 8 278 NADPH P450 reductases AT5G17770 77.1 5.3e-123 438.0
Cone1ag1008 . 1 134 NADPH P450 reductases AT5G53560 73.1 1.1e-54 209.9
Cone5ag0716 . 1 168 NADPH P450 reductases AT5G53560 58.3 2.4e-49 192.2
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.1e-46 183.3
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.9e-46 182.6
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G53560 56.7 1.4e-41 166.4
Cone15ag0479 . 1 133 NADPH P450 reductases AT5G53560 52.2 1.6e-37 152.9
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G48810 65.2 7.4e-49 190.7
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G48810 65.2 1.3e-48 189.9
Cone1ag1008 . 1 135 NADPH P450 reductases AT5G48810 62.0 5.0e-45 177.9
Cone18ag0994 . 1 135 NADPH P450 reductases AT5G48810 55.9 6.3e-40 161.0
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G48810 53.7 2.4e-39 159.1
Cone7ag0386 . 22 133 NADPH P450 reductases AT2G32720 80.4 1.6e-48 189.5
Cone4ag0397 . 22 133 NADPH P450 reductases AT2G32720 79.5 4.6e-48 188.0
Cone1ag1008 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.8e-37 152.1
Cone4ag0958 . 1 117 NADPH P450 reductases AT1G60660 60.0 4.3e-37 151.4
Cone9ag0531 . 1 130 NADPH P450 reductases AT1G26340 59.7 5.5e-41 164.5
Cone3ag0519 . 2 281 NADPH P450 reductases AT5G17770 80.4 9.1e-131 463.8
Cone10ag0494 . 3 281 NADPH P450 reductases AT5G17770 81.0 2.2e-129 459.1
Cone5ag1478 . 8 278 NADPH P450 reductases AT5G17770 76.4 8.2e-124 440.7
Cone1ag0382 . 8 278 NADPH P450 reductases AT5G17770 77.1 5.3e-123 438.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156